Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0670 ATGGGGATAGCAGAAGCATGCTCCAGATTCCTTGGTGACTTTTTACAAGCATTGAAATGCTCCTCAAAAAGCTCAGTGTCTCACCTTGATCATAATTATCATGACCCTTCTTCATGCAAGCCCCAGAATGTGCTCAAACTTGATGACAAGATGGTTGGTGCCCTTGTCAGTGTTTTTGGCATGGAAACCAATGGGAGAATCAAGAAGCTTGGTTTGATGTATGATAATAAGCCCTCATCATCATCAGGGTTTGAGCTAGCTGAGGGTGGCTTGCTTGATGATGAAGTGCCTGTGGAAGAGGTTCTTGGTGAGTTGGAGGACATGTCAAAACGCAGTGAGCTTTTGCATGAAGCCTTCAAGATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAAGGTGCTTGATTGCTTGGGGTTGGACAAGGGTTGGGATATGAGTGCTATTGAGAAGATGGTCAAGGTTGCTGATTTGAACTTTGATGGCAAGGTTTATTTTGGTGAGTTTGAATTGATGATGGGGTAG 537 0.4395 MGIAEACSRFLGDFLQALKCSSKSSVSHLDHNYHDPSSCKPQNVLKLDDKMVGALVSVFGMETNGRIKKLGLMYDNKPSSSSGFELAEGGLLDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKKVLDCLGLDKGWDMSAIEKMVKVADLNFDGKVYFGEFELMMG* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0670 178 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gso6g0670 178 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Gso6g0670 178 CDD EFh 115 173 IPR002048 GO:0005509
Gso6g0670 178 Pfam EF-hand domain pair 114 177 IPR002048 GO:0005509
Gso6g0670 178 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 104 177 - -
Gso6g0670 178 Gene3D - 91 178 - -
Gso6g0670 178 ProSiteProfiles EF-hand calcium-binding domain profile. 148 178 IPR002048 GO:0005509
Gso6g0670 178 PANTHER CALCIUM-BINDING PROTEIN CML42 104 177 - -
Gso6g0670 178 SMART efh_1 114 142 IPR002048 GO:0005509
Gso6g0670 178 SUPERFAMILY EF-hand 93 177 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0670 Gso-Chr6 6183207 6183931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0670 115 177 EF-hand Containing Proteins AT4G20780 55.556 5.61e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0670 - - gmx:100781375 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0669 4 6524184 6525007 Gso6g0670 6 6183207 6183931 GST