Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0669 ATGGGGATAGCAGAAGCATGCTCCAGATTCCTTGGGGACTTTTTACAAGCATTGAAATGCTCCCCACAAAGCTCAGTGTCTCACCTTGATCACAAGCCCCAGAATGTGCTCAAACTTAATGACAAGATGGTTGGTGCCCTTGTCAGTGTTTTTGGCATGGAAACCAACGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTGGTGGAGAAGCTAGGTTTGATGTATGATAAGTCCTCATCATCATCAGGGTTTGAGCTAACTAAGGGTGGCTTGCTGGATGATGAAGTGCCTGTGGAAGAGGTGCTTGGTGAGTTGGAGGACATGTCAAAGCGGAGTGAGCTTTTGCATGAAGCCTTCAAGATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGGTTGGACAAGGGTTGGGATATGAGTGCTATTGAGAAGATGGTGAAGGTTGCTGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGGTAG 537 0.4562 MGIAEACSRFLGDFLQALKCSPQSSVSHLDHKPQNVLKLNDKMVGALVSVFGMETNGRIKKENARQVVEKLGLMYDKSSSSSGFELTKGGLLDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSAIEKMVKVADLNFDGKVDFGEFELMMG* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0669 178 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gso4g0669 178 PANTHER CALCIUM-BINDING PROTEIN CML42 105 177 - -
Gso4g0669 178 ProSiteProfiles EF-hand calcium-binding domain profile. 148 178 IPR002048 GO:0005509
Gso4g0669 178 SUPERFAMILY EF-hand 33 177 IPR011992 -
Gso4g0669 178 CDD EFh 115 173 IPR002048 GO:0005509
Gso4g0669 178 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 105 177 - -
Gso4g0669 178 Pfam EF-hand domain pair 114 177 IPR002048 GO:0005509
Gso4g0669 178 Gene3D - 12 178 - -
Gso4g0669 178 SMART efh_1 114 142 IPR002048 GO:0005509
Gso4g0669 178 SMART efh_1 152 178 IPR002048 GO:0005509
Gso4g0669 178 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0669 Gso-Chr4 6524184 6525007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0669 19 177 EF-hand Containing Proteins AT5G44460 37.791 1.68e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0669 - - gmx:100527700 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0669 4 6524184 6525007 Gso6g0670 6 6183207 6183931 GST