Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0640 ATGCAAGGCAAAGAAATGGAAGGGTTGTCGTCTTCATCGGCGATCGCGCAGAAAACATGGGAACTCGAGAACAACATCATCCCGATGGACACTCCGGGCGGCGCCGCTACCTCCTCCACCGCTACCACCACGACCAACGCCGACGACTCGATCTTCTACTACGACGAGGCGGGGCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCGCTCCTCAAGATGGTCGTCCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGCCGACGCCATCATCGTCATGGACGCCTTCGCCCTCCCAGTCGAAGGCACCGAGACTCGCGTCAATGCCCAGGCCGATGCCTACGAGTACATGGTCGATTATTCCCAGACCAACAAACAGGCTGGGCGGTTGGAGAATGTTGTGGGATGGTATCACTCTCATCCTGGTTACGGTTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAAGAGCCGTTTCTAGCGGTTGTGATTGACCCGACGAGGACTGTTTCGGCGGGGAAGGTTGAGATTGGGGCTTTCAGGACTTATCCTGAAGGGTATAAGCCTCCGGATGAGCCTATTTCTGAGTACCAGACTATTCCTCTCAATAAGATTGAGGATTTTGGTGTTCACTGTAAACAGTATTATGCCTTGGATATTACTTACTTTAAGTCCTCTCTTGATTCACACCTCTTGGACCTGCTGTGGAACAAGTACTGGGTGAATACACTGTCGTCTTCTCCTCTGTTGGGCAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAGAAGCTAGAACAGGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCCACGCCTAGAAAGAAAGAGGAGGAATCTCCACTTGCTAAGATTACTCGTGACAGCGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCGCAGGTCATCAAGGACATTCTGTTTAACTCCGTTCATCAAGCAAACAGAACTCGCACAGAACCATCTGGTCCCGAACCAATGATTGAAAGTTGA 1128 0.5248 MQGKEMEGLSSSSAIAQKTWELENNIIPMDTPGGAATSSTATTTTNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRTEPSGPEPMIES* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0640 375 SUPERFAMILY JAB1/MPN domain 77 214 - -
Gso6g0640 375 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 75 186 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso6g0640 375 CDD MPN_RPN11_CSN5 67 339 - -
Gso6g0640 375 Pfam Cop9 signalosome subunit 5 C-terminal domain 274 354 IPR040961 -
Gso6g0640 375 ProSiteProfiles MPN domain profile. 78 215 IPR037518 -
Gso6g0640 375 Gene3D Cytidine Deaminase, domain 2 9 280 - -
Gso6g0640 375 PANTHER BNAC07G13420D PROTEIN 41 370 IPR037740 GO:0004222|GO:0008180
Gso6g0640 375 SMART pad1_6 77 214 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso6g0640 375 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 41 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0640 Gso-Chr6 5931057 5935214 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0640 K09613 - gmx:100817371 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0639 4 6230696 6236246 Gso6g0640 6 5931057 5935214 GST