Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0639 ATGCAAGGCAAAGAAATGGAAGGGTTGTCGTCTTCGTCGGCGATCGCGCAGAAAACATGGGAACTCGAGAACAACATCATCCCGATGGACACTCCGGGCGGCGCCGCCATCTCCTCCACAACCACCACGACAAGCGCCGACGACTCGATCTTCTACTACGACGAGGCGGGCCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCGCTCCTCAAGATGGTCGTCCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGCCGACGCCATCATCGTCATGGACGCCTTCGCCCTCCCCGTCGAAGGCACTGAGACTCGCGTCAATGCCCAGGCCGATGCGTACGAGTACATGGTCGATTATTCACAGACAAACAAACAGGCAGGGCGGTTGGAGAATGTAGTGGGATGGTATCACTCTCACCCTGGTTATGGTTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCGGTTGTGATTGACCCGACGAGGACCGTTTCGGCGGGGAAAGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGGTATAAGCCTCCGGATGAGCCTGTTTCTGAGTACCAGACCATTCCTCTTAATAAGATTGAGGACTTTGGTGTTCACTGTAAACAGTATTATGCATTGGACATCACTTACTTTAAGTCGTCTCTTGATTCACACCTCTTGGACCTGCTGTGGAACAAGTATTGGGTGAATACACTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAGAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCCACACCTAGAAAGAAAGAGGAGGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCACAGGTTATTAAGGACATTCTGTTTAACTCCGTCCATCAAGCAAACAGAACTCGCACAGAAGCATCTGGTCCCGAACCAATGATTGAAAGCTGA 1125 0.5227 MQGKEMEGLSSSSAIAQKTWELENNIIPMDTPGGAAISSTTTTTSADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRTEASGPEPMIES* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0639 374 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 74 185 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso4g0639 374 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 40 366 - -
Gso4g0639 374 SUPERFAMILY JAB1/MPN domain 76 213 - -
Gso4g0639 374 Pfam Cop9 signalosome subunit 5 C-terminal domain 273 353 IPR040961 -
Gso4g0639 374 Gene3D Cytidine Deaminase, domain 2 9 279 - -
Gso4g0639 374 PANTHER BNAC07G13420D PROTEIN 40 366 IPR037740 GO:0004222|GO:0008180
Gso4g0639 374 SMART pad1_6 76 213 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso4g0639 374 ProSiteProfiles MPN domain profile. 77 214 IPR037518 -
Gso4g0639 374 CDD MPN_RPN11_CSN5 66 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0639 Gso-Chr4 6230696 6236246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0639 K09613 - gmx:100784909 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0639 4 6230696 6236246 Gso6g0640 6 5931057 5935214 GST