Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0613 ATGCGGTTAATATCGCGTGACTTGTTTATATCTTCTCGCTATCGTTATCGTCTCCTTCCTTTGTCCGTCGAACATCCTCTTTTAGGGTTTACACTCTGCTTTCGGCGCCGCTCATACATAGCAGCTCCCTTTCACTTCTTCGCAACATTTCTTCGTCAAGAGCCGATACCAAGTATGCAGATGGCTCAATTGGAGCCCCTTATGAACAAGGTTGATTCGTCAGGGAGACAGATTGAAATGGGGCTCTTGGGTCCCGTATCCAGTGATATCGTGGCACAGTCGCAGGGAACCTCGAATGAACATGTTGGATTATTGAGAGCTGTGCCTGGTGAACCTATGTCTCAGGGATTGCCCCTTTTGAGCATGCACAGTGAGCGGGTAGAAGTACAAGCAAGTAATCCAGGAATGCATCAAATTCTTTCCGCTAACAAACAGTCCATGCAAATGGGTATGCTTCTGAAAAGCTCAGGGCCACAGCAGCAGACAACAACTCCCAAGCGCAAGGCACCAATGGAATTATCGTCCAGTATCTCCTTTAACAAGCGGGTTGCAGCAATGGGAAATAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAAAGGTTCTCTGCAGATGCAATCCCCATCAAATGCCTCTAGGACACAACATTTGGCAGCTTCTAGCAAGAGAAAAACACAGTTGGATAACACTCCCAGTAAATCTGGGACACCTCGGGCCATGAGTTCTAAAAGTCAAAATACGCAGATGAAGCAGTCCTCCAAGGTTCAAACTGAATCATCTGATAGTGTTAGGTCCAAGATGAGAGAGTCTTTAGCTGCTGCTCTGGCCTTGGTTTCTCAGCAAGGTAAACCTCAGCCCCCAAACAATAATACACCGAATGATGCTGCCAATACTCGGGTTAAATTAGAGAACAGCTCTCAATGTGCTGGATCAGCACCTGCATCCATCGATGCTTCACTGGAGCAAAGGCAGGATATTTCTCAATCAGTTAATTCCTCTTTTGCTGTGGCTGATTCAGTTGGCCATGCGGCAGGAGAGCACATGCAAAGTACAACATATGAAGATTTTCCAGAAAAATACAAGGACTTCGAAGCAGGATCCACAAACGCATCGGACAATGAAAACATACTGAGTTCTATGCATGTCTTGAACTGTGATAAGCAAGATTTCCAGTCAAGTTATACTTTGACTACTGATGATGTTCCTTTCAGTGACGGTTTCTTTATGAAAGATGATCTTCTGCAGGGAAATGGTCTTTCGTGGGTATTATCTGATATGGTGGATGTCGGAAATCAAAGGGAAAGTCAACCTAATATAGAGCAGAGATCAGAACCTGAGGAAACGGGTGGAGGTTGTAGGGAGGAGGTCCCTTTGCCTGAACTTTTGGCATCAAGAATAGAGGCAGAACTCTTCAAGCTGTTTCAAGGTGTGAATAAGAAGTACAAAGAAAAAGGGAGGTCTCTCTTATTCAATTTAAAAGATCGCAATAATCCTGAACTTAGAGAAAGGGTCATGTTTGGTAAAATTCCTCCAGAACAATTATGTTCTATGACAGCTGAAGAACTTGCTTCAAAGGAGCTCTCTCAATGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGGTGATTTTAGACGTTTGGTCAAGAAGACACATAAAGGTGAATTTCAAGTGGAAGTTGAACACGAAGACAATGTCCCTGTGGAGGAGGTTTCAGGTGGTACAACCTCTGTTGCTCGAAGCCAAACTATAAAAAAGGATGTGGAAGATGCTTCTCCTTCCAAACCTGATGTGAAAACTGATGCCGAGAAAGGCAATTTGCAGAAGGATGATACATTTTCCATCACCATTTCTTCCAACGACGGGGCTGATCCCATGCAAGGGCTTATTACTGATGATGCATTAAAGGACTCTGACTTTCTTGAACCAATTGTTTCTCTTGATGATTTCATGTATTCTCTTACATATGCGCCTCCATTTGAAAATTTACCAGTAGAATCTGGGAAAGTGGTACCTACCTCAGACAAGGATGATTCCGGGGTTGGAACAAAATCAAAACCTGCTGATTTAACACCAAATGAGCAAGCGGATATCACTGGTGATAATAAGTCTGAGAAGTTTCAAAGCACACATGTAAATTCAGATTCTTTAAAGGAGAAAAAGGTTAATGCTGAATCTGGGGCCATTTCTTCTGATGTGGGATACAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCGTACCAAGGAAAGGTCAACTGATGATGTGAAGTCTGCTTCCAGCGATGCTGAGTTGAGAGGCAATCTCTTTCGTGCGGAAGAGAGATATGATAATGACAATAGGTACTCGAAGGATGCAATCCCCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATCTCTAGCACTCATTCAGTCATAAGCATCTTTAAGAGTGGTGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAGTCCAGAAGTCGTGCAATCATGGTTTCGCATTTCGTTTCCAAAGAGTCGGATGATCAATCAACTCTACGTGAGGTGGCTGACTCGTACATTTTGGACGAGAGAGTAGGATTTGCTGAGCCTGTCCCTGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAGGAACAAATTGAGCCAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGCATCACATCACAAACATAGCTCTAAAAGACAATACTTCAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCTACCCATAAAGCAGTGCCCTCTATGGGCGTTAAGACAACTGAGAATGATGATGATGATGTGCCTCCCGGATTTGGGCCACCAGCGGCCCGAGTGGAGGATGACCTGCCAGAGTTTAATTTTTCCGGCAGTTCAAATCCGTCACATTTGGGCCAAAAATCAATGGGACCACCAAATATGGTCCCATTACACTCGGCTAACCCAGCCCCACCACGCCCTGCAGAACAAATGAGGGAACTTGTGCACAAATATGGGCAAAACAAACCAAATGTACCTTCGGTAAACTGGCAGGATAAATTTGGGGGAACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAAACTCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTAGGCCTCACATTTTGAATCAATCATTTCCGGGTTCACAGCAACAGCCAATAATGACACCACAATATCTTCAACCCCCAATGAATGTGACCCATGGTCAAAGAAATTTTGACCCTCAGTGGGTTCCTTCTCCCCAGGGTAGCAACCTACAGCCAGGAGGTGGACCACCCTATGCGCAAGGCACTACCTGGCCTCAAGATGCGTCTAGAAGTAGAGGATATTAG 3570 0.442 MRLISRDLFISSRYRYRLLPLSVEHPLLGFTLCFRRRSYIAAPFHFFATFLRQEPIPSMQMAQLEPLMNKVDSSGRQIEMGLLGPVSSDIVAQSQGTSNEHVGLLRAVPGEPMSQGLPLLSMHSERVEVQASNPGMHQILSANKQSMQMGMLLKSSGPQQQTTTPKRKAPMELSSSISFNKRVAAMGNRPWLQQVPNASNKGSLQMQSPSNASRTQHLAASSKRKTQLDNTPSKSGTPRAMSSKSQNTQMKQSSKVQTESSDSVRSKMRESLAAALALVSQQGKPQPPNNNTPNDAANTRVKLENSSQCAGSAPASIDASLEQRQDISQSVNSSFAVADSVGHAAGEHMQSTTYEDFPEKYKDFEAGSTNASDNENILSSMHVLNCDKQDFQSSYTLTTDDVPFSDGFFMKDDLLQGNGLSWVLSDMVDVGNQRESQPNIEQRSEPEETGGGCREEVPLPELLASRIEAELFKLFQGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDGDFRRLVKKTHKGEFQVEVEHEDNVPVEEVSGGTTSVARSQTIKKDVEDASPSKPDVKTDAEKGNLQKDDTFSITISSNDGADPMQGLITDDALKDSDFLEPIVSLDDFMYSLTYAPPFENLPVESGKVVPTSDKDDSGVGTKSKPADLTPNEQADITGDNKSEKFQSTHVNSDSLKEKKVNAESGAISSDVGYSGSQADMKSTDGRTKERSTDDVKSASSDAELRGNLFRAEERYDNDNRYSKDAIPTKGECLWEGMLQPNISSTHSVISIFKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRQSRSRAIMVSHFVSKESDDQSTLREVADSYILDERVGFAEPVPGVELYFCPPHKKTVEMLSNILPKEQIEPVNSIDNGLIGIIVWRKTNLTSSISPTTASHHKHSSKRQYFSRRQQDINVNANSTHKAVPSMGVKTTENDDDDVPPGFGPPAARVEDDLPEFNFSGSSNPSHLGQKSMGPPNMVPLHSANPAPPRPAEQMRELVHKYGQNKPNVPSVNWQDKFGGTIQPWNDDDDDIPEWQPQNSQNQFPPQQTMHNFHLRPHILNQSFPGSQQQPIMTPQYLQPPMNVTHGQRNFDPQWVPSPQGSNLQPGGGPPYAQGTTWPQDASRSRGY* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0613 1189 MobiDBLite consensus disorder prediction 694 719 - -
Gso6g0613 1189 Pfam Transcription factor S-II (TFIIS), central domain 456 539 IPR003618 GO:0006351
Gso6g0613 1189 ProSiteProfiles TFIIS central domain profile. 433 551 IPR003618 GO:0006351
Gso6g0613 1189 SUPERFAMILY Elongation factor TFIIS domain 2 460 527 IPR036575 GO:0006351
Gso6g0613 1189 MobiDBLite consensus disorder prediction 752 773 - -
Gso6g0613 1189 Pfam SPOC domain 799 941 IPR012921 -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 193 268 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 737 751 - -
Gso6g0613 1189 Gene3D - 439 526 IPR036575 GO:0006351
Gso6g0613 1189 MobiDBLite consensus disorder prediction 433 454 - -
Gso6g0613 1189 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 77 1169 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 987 1008 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 577 615 - -
Gso6g0613 1189 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 77 1169 - -
Gso6g0613 1189 SMART mid_6 431 534 IPR003618 GO:0006351
Gso6g0613 1189 MobiDBLite consensus disorder prediction 591 615 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 154 173 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 1145 1189 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 669 773 - -
Gso6g0613 1189 MobiDBLite consensus disorder prediction 193 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0613 Gso-Chr6 5696455 5703236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0613 - - gsj:114415028 2341.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0615 4 5964179 5969827 Gso6g0613 6 5696455 5703236 GST