Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0615 ATGTCCAACAATCTGGTTTCAGAGCCGATACCAAGTATGCAGATGGCTCAACTGGAGCCCCTTATGAACAAGGTTGATTCATCAGGGAGACAGGTGGAAATGGGGCTCTTGGGTCCTGTATCCAGTGATGTTATTGTGTCACAGTCGCAGGGAACCTCGAATGAGCATGTTGGATTGTTGAGAGCTGTACCTGGTGAAGCAAGTAATCCAGGAATGCATCAAATTCTGTCCGCTAACAAACACTCCATGCTAATGGATATACTTCCAAACAGCTCAGGGCCACAGCAGCAGCCAACAACTCCCAAGCGCAAGGCACCGATGGAATTATTGTCCAGTAGCTCCTTTAACAAGCGGGTTGCACAGATGGGAAGTAGACCTTGGTTGCAGCAAGTACCTAATGTATCAAATAAAGGTTCTCTGCAGATGCAATCCCCATCACATGCCTCTAGGACACAACATTTGGCAGCTTCTAGTAAGAGAAAAACGCAGTTGGATAACACTCCCAGTAAATCTGGGACACCTCGGTCCATGAGTTCTAAAAGTCAAAATACACAGATGAAGCAGTCCTCCAAGGTTCAAACTGAATCATCTGATAGTGTTAGGTCCAAGATGAGAGAGTCTTTAGCTTCTGCTCTGGCCTTGGTTTGTCAGCAAGGTAAACTTCAGCTCCCAAACAATAATACACCAAATGATGCTGCCAATAGTCAGGGTAAATTAGAGAACAGCTCTCAATGTGCTGGATCAGCACCTGCTTCCATTGATGCTTCACTGGAGCAAAGGAAGGATATTTCTCAATCAGTTAATTCTTCTTTTGCTGATGCTGATTCAGTTGGCAATGTGGTGGGAGAGCACATGCAAAGTACAGCTTATGAAGATTTTCCAGAAAAATACAAGGACTACGAAGCAGGACCCACAAACACATCAAACAATGAAAGCATACTGAGTTCTATGCATGTCTTGAACCGTGATAAGCAAGATTTCCAGTCAAGTTACTTTTTGACTACTGATGCTGTTTCTTTCAGTGACGGTTTCTTTATGAAAGATGATCTTTTACAGGGAAATGGTCTTTCATGGGTATTATCTGATATGGTCGATGTGGGAAATCAAAGGGAAAGTCAAATTAATATAGAGCAGAGATCAGAACCTGAGGAATCAGGTGGAGGTTGTAGGGTGGAGGTCCCTTTGCCTAAACTTTTGGCATCAAGAATAGAGGCAGAACTCTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAAAAAGGGAGGTCTCTTTTATTCAATTTAAAAGATCACAATAATCCTGAACTTAGAGAAAGGGTCATGTTTGGTAAAATTCCTCCAGAACAATTATGTTCTATGACAGCTGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATTTTAGACGTTTGGTCAAGAAGACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTCCCTGTGGAGGAGGTTTCAGGTGGCACAACCTCTGTGGCTCAAAGCCAAACAATAAAAAAGGATGTGGAAGATGCTTCTCCTTCCAAACCTGATGTGAACACTGATGGTGAGAAGGGAAATTTACAGAAGGATGATACATTTTCCATTACCATTTCTTCCAACGACGGGGCTGATCCCATGCAAGGGCTTATGACTGATGATGCATTAAAGGACCCTGACTTTCTTCCACCTATTGTATCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCATTTGAAAATTTACCAGTAGAATCTGGGAAAGTGACACCTACCTCAGACAAGGATGATTCTGGGGTTGGATCTAAATCTAAATCTGCTGATTTAACACCAAATGAGCAAGCTGATGTCAACGCTGATAATAAGTCTGAGAAGTTTCAGAGCACGCGTGTGAATTCAGATGCTGAAAAGGAGAAAAAGATTAATGCTGAATCTGGGGCCATTTCTTCTGATGCGGGATACTGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCATACCAAGGAAAGGTCAACTGATGATGTGAAGTCTGCTTCTAGCGATGCTGAGTTGAGAGGCAATCAGTTTCATCTGGAAGAGAGATATGGTAATAATAATAGGTACTCAAAGGATGCAGTTCTCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATCTCTAGCACTCATTCAGTCGTAAGCATCTTTAAGAGTGGTGAGAAAACTGCTGCTGAAGACTGGCCTGGGTTTCTTGAGATCAAGGGAAGGGTGCGATGTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAGTCCAGAAGTCGGGCAATCATGGTTTCACATTTCGTTTCCAAAGAGTCGGATGATCAATCAACTCTCAGTGAGGTGGCTGACTCGTACGTTTTGGACGAGAGAGTAGGGTTTGCTGAGCCTGCCCCTGGAGTTGAACTTTACTTTTGTCCACCTCATAATAAAACAGTTGAAATGCTCTGCAACATAATTCCAAAGGAACAAATTGAGGAAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGAATCACATCACAAACATAGCTCTAAAAGACAATACTTCAGTAGGAGACAGCAAGATATAAATATGAATGCCAATTCTACCCTTAAAGCAGTGCCCTCTATGGGTGTTAAGATGACTGAGAATGATGATGATGACGTGCCTCCCGGATTTGGGCCACCAGTGGCCCAAGTGGAGGATGACCTGTCAGAGTTTAGTTTCTGTTCAAATCCATCACACTTGGGTCAAAAACCAATGGGGTCATCAAATGTGGTCCCATTACACCCGGTTAACCCAGCTCCACCATGCCCTGCAGAACAAATGAGGGAACTTGTACACAAATATGGGCAAAACAAACCAAATGTACCTTCGATAAACTGGCAGGATAAATTTGGGGGAACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAAACTCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTAGACCTCACATTTTGAATCAATCATTTCCGGGTTCACAGCAACAGCCAATCATGACACCACAATATCTGCAACCCCCAATGAATGTGACCCATGGCCAACGAAATTTTGACCCTCAGGGGGTTCCTTCTCCACAGGGTAGCAACCTACAGCCAAGAGGTGGACCACCCTATGCGCAAGGCACTACCTGGCCTCAACATGCGTCTAGCAGTACAGGATATTAG 3372 0.4333 MSNNLVSEPIPSMQMAQLEPLMNKVDSSGRQVEMGLLGPVSSDVIVSQSQGTSNEHVGLLRAVPGEASNPGMHQILSANKHSMLMDILPNSSGPQQQPTTPKRKAPMELLSSSSFNKRVAQMGSRPWLQQVPNVSNKGSLQMQSPSHASRTQHLAASSKRKTQLDNTPSKSGTPRSMSSKSQNTQMKQSSKVQTESSDSVRSKMRESLASALALVCQQGKLQLPNNNTPNDAANSQGKLENSSQCAGSAPASIDASLEQRKDISQSVNSSFADADSVGNVVGEHMQSTAYEDFPEKYKDYEAGPTNTSNNESILSSMHVLNRDKQDFQSSYFLTTDAVSFSDGFFMKDDLLQGNGLSWVLSDMVDVGNQRESQINIEQRSEPEESGGGCRVEVPLPKLLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDHNNPELRERVMFGKIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDFRRLVKKTHKGEFQVEVEHEDNVPVEEVSGGTTSVAQSQTIKKDVEDASPSKPDVNTDGEKGNLQKDDTFSITISSNDGADPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKVTPTSDKDDSGVGSKSKSADLTPNEQADVNADNKSEKFQSTRVNSDAEKEKKINAESGAISSDAGYCGSQADMKSTDGHTKERSTDDVKSASSDAELRGNQFHLEERYGNNNRYSKDAVLTKGECLWEGMLQPNISSTHSVVSIFKSGEKTAAEDWPGFLEIKGRVRCDAFEKFLQDLRQSRSRAIMVSHFVSKESDDQSTLSEVADSYVLDERVGFAEPAPGVELYFCPPHNKTVEMLCNIIPKEQIEEVNSIDNGLIGIIVWRKTNLTSSISPTTESHHKHSSKRQYFSRRQQDINMNANSTLKAVPSMGVKMTENDDDDVPPGFGPPVAQVEDDLSEFSFCSNPSHLGQKPMGSSNVVPLHPVNPAPPCPAEQMRELVHKYGQNKPNVPSINWQDKFGGTIQPWNDDDDDIPEWQPQNSQNQFPPQQTMHNFHLRPHILNQSFPGSQQQPIMTPQYLQPPMNVTHGQRNFDPQGVPSPQGSNLQPRGGPPYAQGTTWPQHASSSTGY* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0615 1123 ProSiteProfiles TFIIS central domain profile. 369 487 IPR003618 GO:0006351
Gso4g0615 1123 MobiDBLite consensus disorder prediction 596 711 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 532 552 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 222 253 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 1061 1123 - -
Gso4g0615 1123 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 30 1093 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 136 197 - -
Gso4g0615 1123 Pfam SPOC domain 735 877 IPR012921 -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 222 250 - -
Gso4g0615 1123 SMART mid_6 367 470 IPR003618 GO:0006351
Gso4g0615 1123 MobiDBLite consensus disorder prediction 514 531 - -
Gso4g0615 1123 Gene3D - 373 462 IPR036575 GO:0006351
Gso4g0615 1123 MobiDBLite consensus disorder prediction 553 569 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 136 205 - -
Gso4g0615 1123 Pfam Transcription factor S-II (TFIIS), central domain 395 475 IPR003618 GO:0006351
Gso4g0615 1123 MobiDBLite consensus disorder prediction 688 711 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 513 579 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 85 106 - -
Gso4g0615 1123 MobiDBLite consensus disorder prediction 652 669 - -
Gso4g0615 1123 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 30 1093 - -
Gso4g0615 1123 SUPERFAMILY Elongation factor TFIIS domain 2 397 463 IPR036575 GO:0006351
Gso4g0615 1123 MobiDBLite consensus disorder prediction 618 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0615 Gso-Chr4 5964179 5969827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0615 - - gmx:100791982 2211.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0615 4 5964179 5969827 Gso6g0613 6 5696455 5703236 GST