Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0556 ATGAAGCAAGCTTCTTCGGAGGCAGTACCGTCGCTATCCTCGGCGCCGTCGTTCACGGAGACGGCGACATCGTCGTCTTGGTCCGCGGCGGCGGCGGAGGACCTGACGGTGGGGTCGAGGGATGGAGGCGGCGGCGCGCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCAGCGCTGTGCCGATGGACGGTGCACAATTTCCCTCGGATAAAGGCTAGGGCACTTTGGAGCAAGTACTTTGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATACCCCAAGGGTGACTCACAGGCGCTGCCAGGTTACATCTCCATTTACCTCCAAATCATGGACCCCCGCGGCACCTCTTCCTCCAAATGGGACTGTTTCGCCAGCTATCGCTTGGCAATCGTCAACCTCGCCGACGATTCCAAAACCATCCACCGCGATTCCTGGCACCGATTCTCTAGCAAGAAGAAATCACACGGCTGGTGCGATTTCACGCCCTCCAACACTGTTTTCGACCCCAAATTGGGTTACCTCTTCAACACCGATTCCGTTCTGATCACCGCCGATATACTCATCCTCAACGAGTCCGTCAATTTCACGCGCGACAACAATGAGGTGCAGTCCTCGTCTTCCTCCTCTTCCAATGCCATGACTTCCTCTGTTGTTGCGGGTCCCGTCTCTGATGTTTCCAGTGGGAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGCCCCGTTTTCCCTGCGGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCCGTTAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGATACGGATAAGACTGTGGTGTTGTCTGATAGAAGTTGCTGGTGTTTATTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCACAGGGACTCGTATGGGAGGTTTGCCGCGGATAACAAGAGTGGTGACAATACCAGCCTGGGGTGGAATGATTATATGAAGATGTCGGATTTTATCGGCGCGGATTCAGGGTTCTTGGTCGATGACACTGCGGTTTTTAGCACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTGATTGCCGGGAGGAGTGCGAGTGGTGCTAGGAAGTCTGATGGGCATATTGGAAAGTTCACTTGGAGGATTGAGAATTTTACTAGGTTGAAGGATTTGCTGAAGAAGAGGAAAATCACGGGCTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGCAATAGGGATTGTCGACTTATTGTTTACCCTAGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTAAGTCATCGTTTGTCAGTTGTGAACCAAAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCTAAAGCTGCGAAGGATTGGGGTTGGCGTGAATTTGTGACACTTACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCTGCTGAAGTTCTTATATTGAAAGAGACATCAACAATGCAGGATATTACTGAGAACGATTCCGAGTTAAGCAGCAGTGGCTCCCAGGTTGATGGTAATGGGAAAAGAAGTTCATTTTCATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATTTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTATACGAGTCGTTTGACACCATATGTATTTATTTAGAGAGTGACCAGGCTGTTGGTAGTGACCCGGATAAAAATTTCTGGGTCAGATACAGAATGGCAGTTGTGAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACTAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCTGATATGTTGGAATCGGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATACTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGGTTTTAGCATCAGAGGATGATCAGGATGCATTGACTACTGATCCTGATGAGCTCATTGACTCTGAAGACAGTGAAGGGATAAGTGGAGACGAGGAAGACATTTTCAGAAATCTTCTTTTCAGAGCTGGATTCCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCGATTGCGGGGTTTCTGACTGGACTTCGAGTTTATCTTGATGATCCTGCAAAAGTTAAGCGTCTGCTTCTACCTACCAAGCTCTCTGGCAGTTGTGATGGGAAGAAGGCCTCCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATAATTGATTTACTATTGGATATAATGGTTGAGTGTTGCCAACCTTCCGAAGTGGGTCCTGTTGCTGATTCTGTTGATGCATGCTCTAAACCTTCTCCAAATGGAAGTGGAGCTGCAAGTCCCTTTGAGTGTGAAAGAGAAAATGGAGCAATGGAGTCTGCACGAGTTCCCGTTTGTGAGAGGTTGGATTCTGTTGTTCAAGAAAGCAGTAATGCATCTGCTGTGCAGAGCTCTGATTTAAAAGGCAATGGTCTTCAGGAGAAAGCGCTTCCTGGACAGCCCATTTGTCCACCAGAGACATCTGCCACTGCTTCAGAAAATGCATCCCTTCGTTCAAAGACCAAGTGGCCCGAGCAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGACGGGGCTGTTCCACAAGGCTGTCCAGAACCAAGACGGCGACCTCAGTCTGCACAAAAAATTTCTCTTGTATTGGACAAGGCTCCTAAGCATTTACAAGCAGACCTAGTTGCTCTGGTGCCCAAATTGGTTGAGCAGTCAGAACACCCATTGGCTGCCTATGCACTTCTTGAGCGACTTCAGAAGCCAGATGCAGAACCTGCTTTACGAATACCTGTTTACGGAGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGACGAACCCCTAACTGCAACAATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGATCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCACCTTGCGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGACGATGACTATGGTGACAGTTGCTCAGCTCTGCCATGTGGGATTTTCTTATTTGGTGAACATGACACTGCTCCCAGTGGACTGCATGTGATTGATGAGCAGGCTTATCATGCTAGTCGTCATTTTTCAGATATTTATATCCTGTTCGAAATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGTAATAAGTGCTCAGTCTGTAGCCCTGGTATTGCAAAGCCGTCTTTCCCAAAGATTGAACAATAATGGCAGCTATGTTTCTGAAAATTGCCAACATTCAGATGATGCTACAGAGGGAGATGCCTGCGAGCAACTGGGAGTTCAAAGGGATGATTACACTTCTGTTCTTGGTCTTGCTGAAAATTTGGCACTCTCTAGAGATCCCTGCGTGAAAGAATTTGTGAAACTTCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTTATCGGGGGAGGATGCTGAAGAGGCTTGTTGACTGTGCCACCAGCAATACTGACAATGGTCGCGAAGTCGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCTAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCTAGTGAAGATGAAATTATGCGCGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAAATCTATGATATCGCAAAAGCTGACTGAATCTGAGGCCACAAGCAATCGATTGAAGTCTGAAATGAGGGCTGAGATGGATCGGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACAAATTCAAGAAGTTGAGAGTCAGCTTGAATGGATCCGTTCAGAACGGGATGATGAAATTGCAAAGCTCTCAGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAATTGAAGTCCAGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCTCTTGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCAACAGAGAATGTGACCCGGGAAGAAATCCGGCAATCACTCGAAGATGAAGTCCGTAGATTGACTCAAACAGTTGGGCAAACTGAAGGGGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGGCATGCCCCTCTGTATGGTGCTGGTCTGGAGGCTTTATCATTGAAAGAGTTGGAAACACTATCACGAATTCATGAAGATGGGCTTAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCTGCTGGGAGCCCTCTTGTGAGTCCTCATGCTCTCCCTCACAGCCATGGATTATATCCAACTGCATCGCCCCCAATGGCCGTGGGACTGCCTCCCTCAATCATCCCAAATGGGGTAGGGATCCACAGCAACGGCCATGTGAATGGTGGTGGTGGAGTTGGACCCTGGTTTAATCACTCTTGA 5040 0.4605 MKQASSEAVPSLSSAPSFTETATSSSWSAAAAEDLTVGSRDGGGGAQETVAVDRRGEYSALCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLADDSKTIHRDSWHRFSSKKKSHGWCDFTPSNTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNEVQSSSSSSSNAMTSSVVAGPVSDVSSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGADSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSASGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSTMQDITENDSELSSSGSQVDGNGKRSSFSWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLESDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLFRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKASKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPNGSGAASPFECERENGAMESARVPVCERLDSVVQESSNASAVQSSDLKGNGLQEKALPGQPICPPETSATASENASLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKPDAEPALRIPVYGALSQLECGSEVWERILFQSFELLTDSNDEPLTATIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSCSALPCGIFLFGEHDTAPSGLHVIDEQAYHASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGVISAQSVALVLQSRLSQRLNNNGSYVSENCQHSDDATEGDACEQLGVQRDDYTSVLGLAENLALSRDPCVKEFVKLLYMIMFRWFANESYRGRMLKRLVDCATSNTDNGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIMRVREESKTEISNMAKEKSMISQKLTESEATSNRLKSEMRAEMDRFSREKKELAEQIQEVESQLEWIRSERDDEIAKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHALQQRKGSPAGSPLVSPHALPHSHGLYPTASPPMAVGLPPSIIPNGVGIHSNGHVNGGGGVGPWFNHS* 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0556 1679 MobiDBLite consensus disorder prediction 1385 1407 - -
Gso6g0556 1679 SUPERFAMILY TRAF domain-like 58 197 - -
Gso6g0556 1679 SUPERFAMILY TRAF domain-like 399 542 - -
Gso6g0556 1679 ProSiteProfiles MATH/TRAF domain profile. 398 534 IPR002083 GO:0005515
Gso6g0556 1679 CDD MATH 231 363 IPR002083 GO:0005515
Gso6g0556 1679 CDD MATH 399 534 IPR002083 GO:0005515
Gso6g0556 1679 Gene3D - 1434 1627 - -
Gso6g0556 1679 ProSiteProfiles MATH/TRAF domain profile. 230 367 IPR002083 GO:0005515
Gso6g0556 1679 CDD MATH 63 189 IPR002083 GO:0005515
Gso6g0556 1679 MobiDBLite consensus disorder prediction 901 946 - -
Gso6g0556 1679 Coils Coil 1404 1438 - -
Gso6g0556 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 388 543 IPR008974 GO:0005515
Gso6g0556 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 373 IPR008974 GO:0005515
Gso6g0556 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 555 692 IPR008974 GO:0005515
Gso6g0556 1679 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Gso6g0556 1679 SUPERFAMILY TRAF domain-like 567 691 - -
Gso6g0556 1679 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1679 - -
Gso6g0556 1679 Coils Coil 1517 1544 - -
Gso6g0556 1679 Coils Coil 1443 1509 - -
Gso6g0556 1679 MobiDBLite consensus disorder prediction 929 945 - -
Gso6g0556 1679 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1679 - -
Gso6g0556 1679 SMART math_3 235 348 IPR002083 GO:0005515
Gso6g0556 1679 SMART math_3 571 671 IPR002083 GO:0005515
Gso6g0556 1679 SMART math_3 61 169 IPR002083 GO:0005515
Gso6g0556 1679 SMART math_3 403 515 IPR002083 GO:0005515
Gso6g0556 1679 MobiDBLite consensus disorder prediction 1614 1634 - -
Gso6g0556 1679 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Gso6g0556 1679 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g0556 1679 SUPERFAMILY TRAF domain-like 228 373 - -
Gso6g0556 1679 ProSiteProfiles MATH/TRAF domain profile. 566 690 IPR002083 GO:0005515
Gso6g0556 1679 CDD MATH 568 690 IPR002083 GO:0005515
Gso6g0556 1679 Pfam MATH domain 579 686 IPR002083 GO:0005515
Gso6g0556 1679 Pfam MATH domain 68 191 IPR002083 GO:0005515
Gso6g0556 1679 Pfam MATH domain 430 536 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0556 Gso-Chr6 5151450 5160482 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0556 - - gmx:100788511 3272.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0560 4 5409918 5418959 Gso6g0556 6 5151450 5160482 GST