Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0560 ATGAAGCAAGCTTCGTCGGAGGCAGTTCCGTCGCTTTCCTCGGCGCCGTCGTTCACGGAGGCGGCGACATCGTCGACGTCGTCCGCGGCAGCGGCGGAGGACCTGGCGGTGGGGTCGCGGGACGGAGGCGGCGGCGCGCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCGGCGGTGTGCCGATGGACGGTGCATAATTTCCCTCGAATAAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATACCCCAAGGGTGACTCACAGGCGCTGCCTGGTTACATCTCCATTTACCTCCAAATCATGGACCCTCGCGGCACCTCTTCCTCCAAATGGGACTGTTTCGCCAGCTATCGTTTGGCAATCGTCAACCTCGCCGACGATTCCAAAACCATTCACCGCGATTCCTGGCACCGATTCTCCAGCAAGAAGAAATCCCACGGCTGGTGCGATTTCACGCCCTCCAACACTGTTTTCGACCCCAAATTGGGTTACCTCTTCAACACCGATTCTGTTTTGATCACCGCCGATATTCTCATCCTCAACGAGTCCGTCAATTTCACGCGCGACAACAATGAGGTGCAATCCTCGTCTTCCTCGTCCTCCAGTGCGATGACTTCCTCCGTGGTCGCGAGTCCCGTCTCTGATGTTTCCAGTGGGAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGCCCGGTTTTCCCTGCGGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCCGTCAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGACACGGATAAGAGTGTGGTGTTGTCTGATAGAAGTTGCTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCATAGGGATTCTTATGGGAGGTTTGCTGCGGATAACAAGAGTGGTGACAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTTGGATTTCATTGACGCGGATTCGGGGTTCTTGGTGGATGACACTGCGGTTTTCAGCACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTGATTGCCGGGAGGAGTGGGAGTGGTGCAAGGAAGTCTGATGGACATGTTGGAAAGTTCACTTGGAGGATTGAGAATTTTACTAGGTTGAAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACTGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTAAGTCATCGTTTGTCAGTTGTGAACCAAAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGGTACTCTAAAGCTGCGAAGGATTGGGGTTGGCGTGAATTTGTGACACTTACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCCGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATATTACTGAGAACGATTCCGAGTTAAGCAGCAGTGGTTCCCCAGTTGATAAAAGAAGTTCATTTACATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGCTGTGAACTTCGGATTGGTGTATATGAGTCGTTTGACACCATATGTATTTATTTAGAGAGTGACCAGGCTGTTGGTAGTGACCCGGATAAAAATTTCTGGGTCAGATACAGGATGGCAGTTGTGAATCAAAAAAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACAAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGGTTTTAGCATCAGAGGATGATCAGGATGCATTGACTACTGATCCTGATGAGCTCATAGACTCTGAAGACAGTGAAGGGATAAGTGGAGACGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCGATTGCGGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTTAAGCGTCTGCTTCTACCTACCAAGCTCTCTGGCAGTTGTGATGGGAAGAAGGCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGTTGCCAACCTTCCGAAGTGGGTCCTGTTGCTGATTCTGTTGATGCATGCTCTAAACCTTCTCCAAATGGAAGTGGAGCTGCAAGTCCTCTTGAGTGTGAAAGAGAAAATGGAGCAATGGAGTCTGCACGAGTCCCCGTATGTGAGAGGTTGGATTCTGTTGTTCAAGAAAGCAGTAATGCATCTGCTGTGCAGAGCTCTGATTTAAAAGGCAATGGTATTCAGGAAAAAGCACTTCCTGGACAGCCCATTTGTCCACCAGAAACATCTGCCACTGCGTCAGAAAATGCATCCCTTCGTTCAAAGACCAAGTGGCCAGAACAGTCCGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCTGTTCCACAAGGCTGTCCAGAACCAAGACGGCGACCTCAGTCTGCACAAAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTACAAGCAGACCTAGTTGCTCTGGTGCCCAAATTGGTTGAGCAGTCAGAACACCCACTGGCTGCCTGTGCACTTCTTGAGCGACTTCAAAACCCAGAGGCGGAACCTGCTTTACGAATACCTGTTTATGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGATGAACCCCTAACTGCAACAATAAATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGATCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCACCTTGCGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGACGATGATTGTGGTGACAGTTGCTCGGCTTTGCCATGTGGGATTTTCTTATTTGGTGAACATGGCACTGCTCCCAGTGGATTGCATGTGATTGATGAGCAGGCTTATCATGCTAGTCGTCACTTTTCTGATATTTATATACTGTTTGAAATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCCCAGTCTGTAACCCTAGTATTACAAAGCCGTCTTTCCCAAAGATTGAACAATAATGGCAGCTATGCTTCTGAAAATTTCCAGCATTCAGATGGTGCTACAGAGGGAGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGATTACACTTCTGTTCTTGGTCTTGCTGAAAATTTGGCCCTCTCTAAAGACCCATGCGTGAAAGAATTTGTGAAACTTCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTCATCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACGGACAATGGTCGTGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTAGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCCAGTGAAGATGAAATTGTGCGTGTTCGTGAAGAAAGCAAAAATGAGATTTCTAATATGGCTAAGGAAAAAGTTATGATATCGCAAAAGCTGAGTGAATCTGAGGCCACAAACAATCGCTTGAAGTCTGAAATGAGGACTGAGATGGATCGGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACAAATTCAAGAAGTTGAGAGTCAGCTTGAATGGATCCGCTCAGAACGGGATGATGAAATCGCAAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCTCTTGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGACGAAGAACTGAAAAGATTTGCAACAGAGAATGTGACCCGGGAAGAAATCCGGCAATCACTCGAAGATGAAGTTCGTAGATTGACTCAAACAGTTGGGCAAACTGAAGGGGAAAAGCGGGAGAAGGAAGAACAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGACATGCCCCTCTATATGGTGCTGGTCTGGAGGCTTTATCATTGAAAGAGTTGGAAACACTATCACGTATTCATGAAGATGGGCTTAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCTGCCGGGAGCCCTCTTGTGAGTCCCCATGCTCTCCCTCACACCCATGGATTATATCCAACTGCGGCCCCCCCAATGGCCGTGGGTCTGCCTCCCTCAATAATCCCAAATGGTGTAGGGATCCACAGCAACGGCCATGTGAATGGTGGTGCAGTTGGACCCTGGTTTAATCACTCTTGA 5028 0.4598 MKQASSEAVPSLSSAPSFTEAATSSTSSAAAAEDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLADDSKTIHRDSWHRFSSKKKSHGWCDFTPSNTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNEVQSSSSSSSSAMTSSVVASPVSDVSSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKSVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMLDFIDADSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHVGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDITENDSELSSSGSPVDKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPNGSGAASPLECERENGAMESARVPVCERLDSVVQESSNASAVQSSDLKGNGIQEKALPGQPICPPETSATASENASLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAACALLERLQNPEAEPALRIPVYGALSQLECGSEVWERILFQSFELLTDSNDEPLTATINFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDCGDSCSALPCGIFLFGEHGTAPSGLHVIDEQAYHASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVTLVLQSRLSQRLNNNGSYASENFQHSDGATEGDACEQLGVQRDDYTSVLGLAENLALSKDPCVKEFVKLLYMIMFRWFANESHRGRMLKRLVDRATSNTDNGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIVRVREESKNEISNMAKEKVMISQKLSESEATNNRLKSEMRTEMDRFSREKKELAEQIQEVESQLEWIRSERDDEIAKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHALQQRKGSPAGSPLVSPHALPHTHGLYPTAAPPMAVGLPPSIIPNGVGIHSNGHVNGGAVGPWFNHS* 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0560 1675 Pfam MATH domain 68 191 IPR002083 GO:0005515
Gso4g0560 1675 Pfam MATH domain 430 536 IPR002083 GO:0005515
Gso4g0560 1675 Pfam MATH domain 576 683 IPR002083 GO:0005515
Gso4g0560 1675 SUPERFAMILY TRAF domain-like 228 373 - -
Gso4g0560 1675 SUPERFAMILY TRAF domain-like 399 540 - -
Gso4g0560 1675 CDD MATH 231 363 IPR002083 GO:0005515
Gso4g0560 1675 CDD MATH 399 534 IPR002083 GO:0005515
Gso4g0560 1675 Gene3D - 1431 1624 - -
Gso4g0560 1675 PANTHER TRAF-LIKE FAMILY PROTEIN 27 1675 - -
Gso4g0560 1675 CDD MATH 63 189 IPR002083 GO:0005515
Gso4g0560 1675 Coils Coil 1514 1541 - -
Gso4g0560 1675 SUPERFAMILY TRAF domain-like 564 688 - -
Gso4g0560 1675 Coils Coil 1390 1435 - -
Gso4g0560 1675 ProSiteProfiles MATH/TRAF domain profile. 230 367 IPR002083 GO:0005515
Gso4g0560 1675 Coils Coil 1440 1506 - -
Gso4g0560 1675 CDD MATH 565 687 IPR002083 GO:0005515
Gso4g0560 1675 ProSiteProfiles MATH/TRAF domain profile. 398 534 IPR002083 GO:0005515
Gso4g0560 1675 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Gso4g0560 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 222 373 IPR008974 GO:0005515
Gso4g0560 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 548 689 IPR008974 GO:0005515
Gso4g0560 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Gso4g0560 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 389 543 IPR008974 GO:0005515
Gso4g0560 1675 PANTHER TRAF-LIKE FAMILY PROTEIN 27 1675 - -
Gso4g0560 1675 MobiDBLite consensus disorder prediction 926 942 - -
Gso4g0560 1675 MobiDBLite consensus disorder prediction 1387 1407 - -
Gso4g0560 1675 SUPERFAMILY TRAF domain-like 58 197 - -
Gso4g0560 1675 MobiDBLite consensus disorder prediction 898 943 - -
Gso4g0560 1675 SMART math_3 61 169 IPR002083 GO:0005515
Gso4g0560 1675 SMART math_3 568 668 IPR002083 GO:0005515
Gso4g0560 1675 SMART math_3 403 515 IPR002083 GO:0005515
Gso4g0560 1675 SMART math_3 235 348 IPR002083 GO:0005515
Gso4g0560 1675 ProSiteProfiles MATH/TRAF domain profile. 563 687 IPR002083 GO:0005515
Gso4g0560 1675 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0560 Gso-Chr4 5409918 5418959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0560 - - gmx:100780104 3242.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0560 4 5409918 5418959 Gso6g0556 6 5151450 5160482 GST