Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0554 ATGGGATTCATCAGCGGCATGATCGTTGGTATCGCCATTGGCATCGTATTGATCGTCGCTTTCGCTCGTCAGGGAAGCGTTCGATCCAAGCGTCGCTCCGATTTGGCAAAGACGATAGCACAGTTTGCGAGGATGACAGTGGAAGATTCCAGAAAAATTTTGCCTCCTAAGTTCTATCCATCGTGGGTGGTCTTCACTCGGAGACAGAAGTTAAGTTGGCTTAATAGCCAAGTCGAGAAGATTTGGCCATTCGTTAATGAGGCAGCTTCAGAGTTGATAAGAACCAATGTGGAACCAATTCTTGAACAATATAGGCCGATTATTTTGTCTTCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAGTTACAATTGTTGAAGAGAATAGTGGGCCTGAGGGGGTGACTATGGATCTTGAGATGCAGTGGGATGGTAACCCGAACATCGTTCTTGACATTAAAACCCGAGTTGGTGTTGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAGCCACTAGTGGATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAAAGAAAAGAAAGATCTGGATTTTACTCTCAAGGTTATTGGTGGTGATTTATCAACTTTACCGGGGATATCTGATGCTATAGAGGAAACAATTAGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAGTTATACCAATTCTACCCGGGGATTACAGTAATCTAGAGTTGAAACCGGTTGGAAAACTAGAAGTAAAACTAGTGCAAGCAAAGAACTTAACAAATAAAGATATAGTTGGGAAATCCGATCCTTATGCTGTCATATTTGTACGCCCCCTCCGTGACAGAACCAAAACCAGTAAAATAATGAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAATTCATTATTGAAGATGCGTCAACGCAGCACTTGACAGTAAGAATTTTCGATGATGAAGGCGTTCAGGCTTCTGAACTTATTGGCTGTGCCCAAGTTTCCTTGAAGGATCTTGAACCTGGTAAAGTCAAGGACGTATGGCTTAAGCTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTCTTATACTGCCCATTTGGAGTCGAAAGTGCCATTAGAAACCCTTTTGACCCTGATTTCTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGGAACGGGTGACGCAGAGGCTGAAGATCTTATAGGGTCACGTAGGAGAAACAACGTGATTGTAAGAGGGGTTCTATCTGTGACAGTGATTTCAGCTGAAGATTTGCCAGCAGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTTCTGTTGAAAAAAACAGAAAAAAAACTCAAGACCAGAGTTGTAAATGAATCCCTAAACCCTGTTTGGAATCAAACATTTGATTTTGTTGTGGAGGATGGCTTACACGAAATGTTAATTCTTGAAGTCTACGATCATGATACGTTTGGCAAGGAAAAAATTGGAAGAGTGATCTTGACACTGACTAAGGTCATCTTAGAAGGGGAATACAATGAAACTTATCCTCTAGATGGAGCAAAATCGGGAAATATTTCTTTGCATTTGAAGTGGACTCCACAGCACAAGTTTCGGGATCCTTAG 1701 0.4239 MGFISGMIVGIAIGIVLIVAFARQGSVRSKRRSDLAKTIAQFARMTVEDSRKILPPKFYPSWVVFTRRQKLSWLNSQVEKIWPFVNEAASELIRTNVEPILEQYRPIILSSLTFSKLTLGTVAPQFTGVTIVEENSGPEGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFKPLVDEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSTLPGISDAIEETIRDAIEDSITWPVRKVIPILPGDYSNLELKPVGKLEVKLVQAKNLTNKDIVGKSDPYAVIFVRPLRDRTKTSKIMNNQLNPVWNEHFEFIIEDASTQHLTVRIFDDEGVQASELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIRNPFDPDFSLTTFEKTLKSGTGDAEAEDLIGSRRRNNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLLLKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLTKVILEGEYNETYPLDGAKSGNISLHLKWTPQHKFRDP* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0554 566 Gene3D C2 domain 438 564 IPR035892 -
Gso6g0554 566 ProSiteProfiles C2 domain profile. 424 541 IPR000008 -
Gso6g0554 566 ProSiteProfiles C2 domain profile. 245 366 IPR000008 -
Gso6g0554 566 PRINTS C2 domain signature 458 470 IPR000008 -
Gso6g0554 566 PRINTS C2 domain signature 484 497 IPR000008 -
Gso6g0554 566 PRINTS C2 domain signature 506 514 IPR000008 -
Gso6g0554 566 CDD C2 266 368 - -
Gso6g0554 566 PANTHER SYNAPTOTAGMIN-4 1 565 - -
Gso6g0554 566 SMART C2_3c 442 540 IPR000008 -
Gso6g0554 566 SMART C2_3c 265 365 IPR000008 -
Gso6g0554 566 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 565 IPR045050 GO:0008289
Gso6g0554 566 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Gso6g0554 566 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Gso6g0554 566 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Gso6g0554 566 Pfam C2 domain 264 368 IPR000008 -
Gso6g0554 566 Pfam C2 domain 441 543 IPR000008 -
Gso6g0554 566 CDD C2 443 543 - -
Gso6g0554 566 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 437 560 IPR035892 -
Gso6g0554 566 Gene3D C2 domain 256 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0554 Gso-Chr6 5137184 5142832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0554 399 531 Lipid Metabolism Gene Families AT1G51570 31.387 4.38e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0554 - - gmx:100787972 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0559 4 5403036 5406690 Gso6g0554 6 5137184 5142832 GST