Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0551 ATGAGCACGGTGTCTCTTCTCAAGTGCTACAGACCCTTTTTCTCTATGCTTTTCCCTCACTCTGCCCCACCCAGACCCCACGCCTCCATCTTCAGGAGGAAAAACTTCCCTTCTTTTTGCGCCACCTCATCTCCGCCGCCGTTGACGGCGGAGAAGGGTTGCGGCAAATTCGACTCCGAGGGTCTCGCCTTGCCGGAGGTGTGGCTGCACAACACCATGAGTAAGACGAAGGAGCTCTTCAAACCCAAAGTGGATTCCAAAGTGGGAATGTACGTGTGCGGCGTCACCGCTTACGATCTCAGCCATATTGGACATGCTCGCGTATACGTCAATTTCGACCTTCTTTACAGATACTTTAAGCATTTGGGATTTCAAGTCTGTTATGTTCGCAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGCCGGCGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTCTGTCTCCCTCTGTGGAACCAAAGGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACATTGTTGATGGGGACGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAACTATCTAGTCGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTCGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCGGGGGAGCCATTTTGGGAGAGTCGCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGATATCCATGGTGGAGGAATCGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTGATATAAGTGTATGGATGCACAATGGTTTTGTCACCATTGACTCTGTCAAAATGTCAAAATCTTTGGGGAATTTTTTCACAATACGTCAGGTTATAGACATTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGCGCACATTATCGATCTCCTATTAACTACTCAAATATACAGCTTGAAAGTGCTTCAGACCGTGTTTTTTATATATATGAGACATTACATGAATGTGAAAGCTTTTTGAATCAGCATGATCAGACAATTAGGAAGGATTCCATCCCACCGGATACCTTGGATATTATTGATAAGTTCCATGATGTTTTTTTGACCTCGATGTCGGATGATCTTCACACTCCTGTTGTATTGGCTGGAATGTCCGATCCATTAAAATCAATCAATGATTTGCTACATACCCGTAAGGGGAAAAAACAACAATTTCGAATTGAATCACTTTCAGCTTTGGAGAAGAGCGTCAGGGATGTCCTTACTGTTTTAGGACTTATGCCTGCAAGTTACTTTGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACGGAAGACGACGTCTTGCAGAAAATTGAAGAACGGGCTGCTGCTAGAATTCAAAAGGAGTATGCTAAATCGGATGCAATTAGGAAGGATTTGGCTGTTGTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCTGCCATTCCTCTTCCACTTCAAGAGCTGCTCTAA 1686 0.433 MSTVSLLKCYRPFFSMLFPHSAPPRPHASIFRRKNFPSFCATSSPPPLTAEKGCGKFDSEGLALPEVWLHNTMSKTKELFKPKVDSKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFQVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFCQDMVTLNCLSPSVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESRWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYHPLALRYFLMSAHYRSPINYSNIQLESASDRVFYIYETLHECESFLNQHDQTIRKDSIPPDTLDIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLSALEKSVRDVLTVLGLMPASYFEVLQQLKEKALKRANLTEDDVLQKIEERAAARIQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPAIPLPLQELL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0551 561 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 406 550 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso6g0551 561 Hamap Cysteine--tRNA ligase [cysS]. 67 552 IPR015803 GO:0004817|GO:0005524|GO:0006423
Gso6g0551 561 Gene3D - 370 551 - -
Gso6g0551 561 Pfam tRNA synthetases class I (C) catalytic domain 81 376 IPR032678 -
Gso6g0551 561 SUPERFAMILY Nucleotidylyl transferase 67 373 - -
Gso6g0551 561 TIGRFAM cysS: cysteine--tRNA ligase 69 550 IPR015803 GO:0004817|GO:0005524|GO:0006423
Gso6g0551 561 PANTHER CYSTEINYL-TRNA SYNTHETASE 66 555 IPR024909 -
Gso6g0551 561 PRINTS Cysteinyl-tRNA synthetase signature 90 101 IPR024909 -
Gso6g0551 561 PRINTS Cysteinyl-tRNA synthetase signature 126 135 IPR024909 -
Gso6g0551 561 PRINTS Cysteinyl-tRNA synthetase signature 255 273 IPR024909 -
Gso6g0551 561 PRINTS Cysteinyl-tRNA synthetase signature 286 307 IPR024909 -
Gso6g0551 561 CDD CysRS_core 68 369 IPR032678 -
Gso6g0551 561 Gene3D HUPs 56 369 IPR014729 -
Gso6g0551 561 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 66 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0551 Gso-Chr6 5117221 5122091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0551 K01883 - gmx:100786700 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0556 4 5379438 5384464 Gso6g0551 6 5117221 5122091 GST