Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0556 ATGAGCTGGTCCGGTGCAAAAATGGGTACGGTGTCTCTTCTCAAGTGCTACAGACCCTTTTTCTCTATGCTTTTCCCTCACTCCGCTCCACCCAGACTCCACGCCGCCATCTTCAGGAGCAAAAACTTTTCTTTTTGCGCCACCTCGTCCCCGCCGTTGACGGCGGAGAAGGGTTGCGGCAAATCCGACGCCGAGTGTCCCACCTTGCCGGAGGTGTGGCTGCACAACACCATGAGTAGGACGAAGGAACTCTTCAAACCCAAAGTGGAATCCAAAGTGGGAATGTACGTGTGCGGCGTCACCGCTTATGATCTTAGCCATATTGGACACGCTCGCGTATACGTCAATTTCGACCTTCTTTACAGATACTTTAAGCATTTGGGATTTGAAGTCTGTTATGTTCGCAATTTCACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGCTGGCGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTCTGTCTCCCTCTGTGGAACCAAAGGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATCCTTAATAATGGGTATGCCTACATTGTTGATGGGGATGTGTACTTTAATGTAGAAAAATTTCCAGAATATGGGAAACTATCTAGTCGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTTGATTCTAGAAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGATATCCATGGTGGAGGAATCGACCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTGATATAAGTATATGGATGCACAATGGTTTTGTCACCATTGACTCTGTGAAAATGTCAAAATCTTTGGGGAATTTTTTCACAATACGTCAGGTTATAGACGTTTACCATCCACTGGCCTTGAGATATTTTTTGATGAGCGCACATTATCGATCTCCTATTAACTACTCAAATATACAGCTCGAAAGTGCTTCAGACCGTGTTTTTTATATATATGAGACATTACATGAATGTGAAAGCTTTTTGAATCAGCATGATCAGAGGAAGGATTCCACCCCACCGGATACTTTGGATATTATTGATAAGTTCCACGATGTTTTTTTGACCTCAATGTCGGATGATCTTCACACTCCAGTTGTATTGGCTGGAATGTCTGATCCATTAAAATCAATCAATGATTTGCTGCATGCTCGTAAGGGGAAAAAACAACAATTTCGAATCGAATCACTATCAGCTTTGGAGAAGAGCGTCAGGGATGTCCTTACTGTTTTAGGACTTATGCCTGCAAGTTACTCTGAGGTTTTGCAGCAGCTTAAGGTAAAAGCTTTAAAACGTGCAAACTTTACGGAAGAAGAAGTCTTGCAGAAAATTGAAGAACGGGCTACTGCTAGAATGCAAAAGGAGTATGCTAAATCGGATGCAATCAGGAAGGATTTGGCTGTACTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCTGCCATTCCTCTTCCACTTCAAGAGCTGCTCTAA 1695 0.4342 MSWSGAKMGTVSLLKCYRPFFSMLFPHSAPPRLHAAIFRSKNFSFCATSSPPLTAEKGCGKSDAECPTLPEVWLHNTMSRTKELFKPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKELGEDPISLSWRYCEEFCQDMVTLNCLSPSVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISIWMHNGFVTIDSVKMSKSLGNFFTIRQVIDVYHPLALRYFLMSAHYRSPINYSNIQLESASDRVFYIYETLHECESFLNQHDQRKDSTPPDTLDIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHARKGKKQQFRIESLSALEKSVRDVLTVLGLMPASYSEVLQQLKVKALKRANFTEEEVLQKIEERATARMQKEYAKSDAIRKDLAVLGITLMDSPNGTTWRPAIPLPLQELL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0556 564 Gene3D - 373 554 - -
Gso4g0556 564 CDD CysRS_core 73 374 IPR032678 -
Gso4g0556 564 PANTHER CYSTEINYL-TRNA SYNTHETASE 71 558 IPR024909 -
Gso4g0556 564 SUPERFAMILY Nucleotidylyl transferase 72 378 - -
Gso4g0556 564 TIGRFAM cysS: cysteine--tRNA ligase 74 553 IPR015803 GO:0004817|GO:0005524|GO:0006423
Gso4g0556 564 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 71 558 - -
Gso4g0556 564 PRINTS Cysteinyl-tRNA synthetase signature 95 106 IPR024909 -
Gso4g0556 564 PRINTS Cysteinyl-tRNA synthetase signature 131 140 IPR024909 -
Gso4g0556 564 PRINTS Cysteinyl-tRNA synthetase signature 260 278 IPR024909 -
Gso4g0556 564 PRINTS Cysteinyl-tRNA synthetase signature 291 312 IPR024909 -
Gso4g0556 564 Gene3D HUPs 60 372 IPR014729 -
Gso4g0556 564 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 410 553 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso4g0556 564 Pfam tRNA synthetases class I (C) catalytic domain 85 381 IPR032678 -
Gso4g0556 564 Coils Coil 497 517 - -
Gso4g0556 564 Hamap Cysteine--tRNA ligase [cysS]. 72 555 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0556 Gso-Chr4 5379438 5384464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0556 K01883 - gmx:100777971 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0556 4 5379438 5384464 Gso6g0551 6 5117221 5122091 GST