Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0540 ATGATGGAATCCGGGGCTCACTTCTGTAACTCTTGTGGTGAACAAATTGGACTTGATGCTAATGGGGAGGTGTTTGTGGCTTGTCATGAGTGTTATTTTCCAATTTGCAAGGCTTGTTTTGAATATGAAATCAATGAGGGGCGTAAAGTCTGCTTGAGATGTGCCACTCCCTATGCTGATAGAGCAAAGGATAATAATGACACCAAGGTTTATGAAAACCAATCCACAACAGCTGCCCAGATCAATGTTTCTCAGGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAATTAAATGATGAATCCGGGAATCCAATCTGGAAAAATAGAGTGGAAAGCTGGAAGGAAAAGGATAAAAAGAAGAAGAAGAAAAAGTCTGCACCTAAGGCTGAAAATGAGGCACCAATTCCACCAGAACAGCAGATGGAAGAAATGCAGTCCTCAGAGGCTGCTGCTGCTGAACCACTTTCAATGGTTATTCCAATCTCAAAAACAAGACTCGCGCCATACAGAACTGTGATAATCGTGCGACTGATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACATCCATCATATGTGAGATCTGGTTTGCCTTTTCCTGGGTGTTAGATCAGTTCCCTAAATGGTCTCCTGTCAATAGAGAAGCTTTTATTGACAGGCTTTCTTTAAGGTATGAAAGACCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTGAAAGAACCACCATTGATCACGGCTAATACAGTGCTTTCTATTCTTGCTGTGGACTATCCTGTGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCTGCAATGCTGTCATTTGAGTCCCTTGTGGAGACAGCTGACTTTGCAAGAAAGTGGGTTCCATTTTGCAAAAAGTTTTCAATTGAACCACGCGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTGAAGGACAAAGTACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGGGAGTATGAAGAGTTTAAAGTGCGAGTTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACTTCATGGCCAGGAAACAACTCACGTGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCATGACATAGAGGGAAATGAACTTCCCAGGTTGGTGTATGTTTCTAGAGAGAAAAGGCCAGGCTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGACTGTGATCATTATGTGAACAATAGCAAGGCTGTACGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGCAGAGATTTGTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATAGATCGTAGTGATCGATATGCCAATCGAAACACAGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTATGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTACAGTCCACCATCTATGCCCAAATTACCAAAATCATCATCCTGCTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGACGTCTCAGAGCTTTATAGAGATGCAAAGAGGGAAGAACTTGATGCCGCCATTTTTAATCTCAGGGAGATTGACAACTATGATGAATACGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTAATGGAGAATGGAGGGCTTCCTGAATCTGCTGATCCCTCAATGCTGATCAAAGAGGCCATTCATGTTATTAGCTGTGGATATGAAGAGAAAACTGCATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTTACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGGGGATGGAGATCAGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGTTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTCTTCAGCAGACATTGCCCCCTCTGGTATGGTTTTGCGGGAGGTCGCCTCAAATGGCTGCAGAGACTTGCTTACATAAACACCATTGTCTACCCCTTTACATCCCTTCCTCTTGTTGCATATTGTACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCAAACCTTGCAAGTGCCCTCTTTCTTGGACTTTTCCTGTCCATTATAGTCACTAGTGTGCTCGAGCTGCGGTGGAGTGGTGTGACCATTGAAGCTTTGTGGCGTAATGAACAATTCTGGGTTATTGGAGGAGTTTCAGCGCATCTATTTGCCGTGTTCCAAGGATTCCTGAAGATGTTGGCAGGTGTTGACACCAACTTCACTGTCACTGCCAAAGCTGCTGATGACACCGAGTTTGGTGATCTATACATAATCAAGTGGACCACACTCTTAATTCCTCCAACAACCCTTATCATTATTAATATGGTTGGTGTTGTTGCTGGATTTTCTGATGCACTCAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTCTGGGTCATTTTCCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACCGCACCCCAACCATTGTTATTCTGTGGTCAGTGTTGTTGGCTTCTGTTTTCTCTCTGGTTTGGGTCAAGATTAACCCTTTTATCAGCAGACCTGACAGTGCAAGCATTTCCCAGACCTGCATTTCTATAGATTGCTAA 2928 0.4355 MMESGAHFCNSCGEQIGLDANGEVFVACHECYFPICKACFEYEINEGRKVCLRCATPYADRAKDNNDTKVYENQSTTAAQINVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKKKKKKSAPKAENEAPIPPEQQMEEMQSSEAAAAEPLSMVIPISKTRLAPYRTVIIVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVNREAFIDRLSLRYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKREYEEFKVRVNALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGLPESADPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIVTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGDLYIIKWTTLLIPPTTLIIINMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVFSLVWVKINPFISRPDSASISQTCISIDC* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0540 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Gso6g0540 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 768 IPR029044 -
Gso6g0540 975 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 975 - -
Gso6g0540 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 547 IPR029044 -
Gso6g0540 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 975 - -
Gso6g0540 975 MobiDBLite consensus disorder prediction 115 154 - -
Gso6g0540 975 SUPERFAMILY RING/U-box 2 63 - -
Gso6g0540 975 Coils Coil 354 374 - -
Gso6g0540 975 Pfam Cellulose synthase 256 966 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso6g0540 975 Pfam Zinc-binding RING-finger 5 60 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0540 Gso-Chr6 5001674 5008026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0540 1 975 Glycosyltransferase AT4G18780 82.234 0.0 1674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0540 K10999 - gmx:100806522 1898.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0546 4 5262369 5268672 Gso6g0540 6 5001674 5008026 GST