Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0546 ATGATGGAATCCGGGGCTCACTTCTGCAACTCTTGTGGTGAACAAATTGGACTTGATGCCAATGGGGAGCTGTTTGTGGCTTGTCATGAGTGTTATTTTCCAATTTGCAAGGCTTGTTTTGAATATGAAATCAACGAGGGGCGTAAAGTCTGCTTGAGATGTGCCACTCCCTATTCTGATAGAGTAAAGGATAATGATGGCACCAAGGTTTATGAAAATCAATCCACAACAGCTGCCCAGATCAATGTTTCTCAGGATGTTGGCCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAATTAAACGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTGGAAAGCTGGAAGGAAAAGGATAAAAAGAAGAAGAAGAAGAAAAAGTCTGTACCTAAGGCTGAAAATGAGGCACCAATTCCACCAGAACAGCAGATGGAAGAAATACAGTCCTCAGAGGCTTCTGCTGCTGAACCACTTTCAATGGTTATTCCAATCTCAAAAACGAGACTCGCACCATACAGAACTGTGATAATCGTGCGGCTAATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGTCTGTGGTTGACATCCATCATATGTGAGATCTGGTTTGCCTTTTCCTGGGTGTTAGATCAGTTCCCTAAATGGTCTCCTGTCAATAGGGAAGCTTTTGTTGACAGGCTTTCTGCAAGGTATGAAAGACCTGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTCGATCCTCTGAAAGAACCACCATTGATCACGGCTAATACAGTGCTTTCTATTCTTGCTGTGGACTACCCTGTGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCCGCAATGCTGACATTTGAGTCCCTTGTGGAGACAGCTGACTTTGCAAGAATGTGGGTTCCATTTTGCAAAAAGTTTTCTATTGAACCACGTGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTGAAGGACAAAGTACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGGGAGTATGAAGAGTTTAAAGTGCGAGTTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACCTCATGGCCAGGAAATAACTCCCGTGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCATGACGTAGAGGGAAATGAACTTCCCAGGTTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGACTGTGATCATTATGTGAACAATAGCAAGGCTGTACGAGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGCAGAGATTTGTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTGGATGGCATTCAAGGACCTATGTATGTGGGAACCGGATGTGTTTTCAATAGACAAGCACTTTATGGCTACAGTCCACCTTCTATGCCCAAATTACCAAAATCATCATCCTGCTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGATGTCTCCGAGCTTTATAGAGATGCAAAGAGGGAAGAACTTGATGCTGCCATTTTTAATCTTAGGGAGATTGACAACTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAATCTACACTGATGGAGAATGGAGGACTTCCTGAATCTTCTGATCCCTCGATGCTGATCAAAGAGGCCATTCATGTTATTAGCTGTGGTTATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTTACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGTGGATGGAGGTCAGTTTACTGCATGCCCCTAAGGCCTGCATTCAAGGGATCAGCACCAATCAATCTTTCTGATCGATTGCACCAAGTTCTTCGTTGGGCCCTTGGATCAGTTGAAATTTTCTTTAGCAGACATTGCCCCCTCTGGTATGGTTTTGCAGGGGGTCGCCTCAAATGGCTGCAGAGACTGGCTTACATAAACACCATTGTCTACCCCTTTACATCCCTTCCTCTCGTTGCTTATTGTACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCGAACCTTGCTAGTGCTCTCTTTCTTGGACTTTTCCTGTCCATTATAGTAACTAGTGTGCTCGAGCTGCGGTGGAGTGGTGTGACCATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCCCATCTATTTGCTGTGTTCCAAGGATTCCTGAAGATGTTGGCTGGTGTTGACACCAACTTCACTGTCACTGCTAAAGCTGCTGATGACACTGAGTTTGGTGAACTATATATAATCAAGTGGACCACACTCTTAATTCCTCCAACAACCCTTATCATTATTAATATAGTTGGTGTTGTTGCTGGATTTTCTGATGCACTCAATGGAGGATATGAATCATGGGGACCACTTTTTGGAAAGGTCTTCTTTGCCTTCTGGGTCATTTTCCATCTCTACCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACCGCACTCCAACCATTGTTATTCTGTGGTCAGTGCTGTTGGCTTCTGTTTTCTCTCTGGTTTGGGTCAAGATTAACCCTTTTATCAGCAGACCTGACAGTGCAAGCATTTCCCAGACCTGCATTTCTATAGATTGCTAA 2931 0.4377 MMESGAHFCNSCGEQIGLDANGELFVACHECYFPICKACFEYEINEGRKVCLRCATPYSDRVKDNDGTKVYENQSTTAAQINVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKKKKKKKKSVPKAENEAPIPPEQQMEEIQSSEASAAEPLSMVIPISKTRLAPYRTVIIVRLIILGLFFHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVNREAFVDRLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKREYEEFKVRVNALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGLPESSDPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIVTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYIIKWTTLLIPPTTLIIINIVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVFSLVWVKINPFISRPDSASISQTCISIDC* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0546 976 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 976 - -
Gso4g0546 976 Coils Coil 355 375 - -
Gso4g0546 976 Pfam Cellulose synthase 257 967 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso4g0546 976 MobiDBLite consensus disorder prediction 115 155 - -
Gso4g0546 976 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 399 548 IPR029044 -
Gso4g0546 976 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 976 - -
Gso4g0546 976 SUPERFAMILY RING/U-box 2 64 - -
Gso4g0546 976 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Gso4g0546 976 Pfam Zinc-binding RING-finger 5 60 IPR027934 -
Gso4g0546 976 SUPERFAMILY Nucleotide-diphospho-sugar transferases 271 769 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0546 Gso-Chr4 5262369 5268672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0546 1 976 Glycosyltransferase AT4G18780 82.132 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0546 K10999 - gmx:100784207 1901.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0546 4 5262369 5268672 Gso6g0540 6 5001674 5008026 GST