Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0486 ATGATTGACTCATTAATTTCTGCTGCGAAAGTCGGTGACATAGACCTGCTCTACAAACTAATTCAGATGCAACCATATGTGTTGGAGCACACAGATTTCATGCCATTTGTTGATACTCCTTTGCATGTTGCAGCCGCAGCTGGGCATGCAAGTTTCGCCACTGAGATCATGAGACTCAAGCCTTCATCTGTATGGAAGCTGAATCAATGTGGCCTTAGCCCCATGCACCTTGCCTTGCAGAACAAGCATTACAGAATGGTGTGTCGCTTTGTGAACATCAACAAGGACCTTGTTAGAGTCAAAGGGAGGGAAGGTCTCACTCCTTTGCATATTGCTACTCAAACTGGGAGAACTGATCTTGTGGCTAAGTTCTTGTCGGCTTGCCCTGGTTCCATTGAAGATGTGACCGTCCGAAGTGAGACTGCGTTACACATTGCTGTGAAATATGATCAGTTTAAGGCCTTGGAGGTCTTGGTTGGATGGCTTCAGAGAAATTGCCAAAGACTTGCTGAGGACCGGGAAAAAAGGGTTTTAAATTGGCAAGATGAAGCAGGCAACACCGCTCTCCATCTTTCAGTTCTCAAAGGCTTCCCACAGGCAGTTAGGTTGTTGATAGACCGCAACATAGACAAAAAAGTCAAGAACTTTGAGGACTCAACAGCGTTGGACATAGTGGAGATCAATCAAACTCAGGCTCACTGTGCATTGATCAGAAATGAGTTGGTTAGAGGAGGAGCTTTACGTGGGTTTTCACTAGCCAATGTTCCACTCCTAGAAGAAGAGCTAAGAGCAAAAATCACATTCAATGAGCGAATACCAATCTATGTTACTCGTCTCAGAAAGCGAATATCAAACGATACACGCAATGCTTTGTTGGTGATTGCTATTCTCTTCGTAACGAGCACGTACGAAGAAGCACTTAGCCCCCCCGGTGGAGTTTACCAAGGTGAGGCTATGGTGATGAAAATGCAAACGTTCTTCTGGTTTTGGTCCTTCAATGCATGGTCCTTTTATCTATCAATTTTGATGATATGTTTGTTAATGCCACGAGGGCGCATCAGCCTTATAGTTACTTTCTCACTTTCTATCTTTTTTGGGTGCTACGTGTTCTCCAAGATGGTTATATCACCCAGCCTCAAGTTAAACACTGCCACTGCGGTTATGCCATGCATATTTATCGTCTTCTACAGTTGGGGAAGTTCGATATACATTAGGTTAGCCAAAAAACTTAAAATGTACGGTTATAGACAAAAAGACGCGTTGAAGTTTTCCAGAGGAAATAGATGGTAA 1290 0.4364 MIDSLISAAKVGDIDLLYKLIQMQPYVLEHTDFMPFVDTPLHVAAAAGHASFATEIMRLKPSSVWKLNQCGLSPMHLALQNKHYRMVCRFVNINKDLVRVKGREGLTPLHIATQTGRTDLVAKFLSACPGSIEDVTVRSETALHIAVKYDQFKALEVLVGWLQRNCQRLAEDREKRVLNWQDEAGNTALHLSVLKGFPQAVRLLIDRNIDKKVKNFEDSTALDIVEINQTQAHCALIRNELVRGGALRGFSLANVPLLEEELRAKITFNERIPIYVTRLRKRISNDTRNALLVIAILFVTSTYEEALSPPGGVYQGEAMVMKMQTFFWFWSFNAWSFYLSILMICLLMPRGRISLIVTFSLSIFFGCYVFSKMVISPSLKLNTATAVMPCIFIVFYSWGSSIYIRLAKKLKMYGYRQKDALKFSRGNRW* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0486 429 PANTHER HOMEOBOX PROTEIN WARIAI 319 395 - -
Gso6g0486 429 PANTHER HOMEOBOX PROTEIN WARIAI 11 318 - -
Gso6g0486 429 SUPERFAMILY Ankyrin repeat 5 236 IPR036770 -
Gso6g0486 429 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Gso6g0486 429 Pfam Ankyrin repeats (many copies) 178 224 IPR002110 GO:0005515
Gso6g0486 429 PANTHER ANKYRIN REPEAT PROTEIN 319 395 - -
Gso6g0486 429 PANTHER ANKYRIN REPEAT PROTEIN 11 318 - -
Gso6g0486 429 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Gso6g0486 429 Gene3D - 1 241 IPR036770 -
Gso6g0486 429 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Gso6g0486 429 Pfam Domain of unknown function 285 350 IPR026961 -
Gso6g0486 429 SMART ANK_2a 70 99 IPR002110 GO:0005515
Gso6g0486 429 SMART ANK_2a 138 171 IPR002110 GO:0005515
Gso6g0486 429 SMART ANK_2a 36 65 IPR002110 GO:0005515
Gso6g0486 429 SMART ANK_2a 104 134 IPR002110 GO:0005515
Gso6g0486 429 SMART ANK_2a 184 213 IPR002110 GO:0005515
Gso6g0486 429 Pfam Ankyrin repeats (3 copies) 99 159 IPR002110 GO:0005515
Gso6g0486 429 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0486 Gso-Chr6 4471773 4474284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0486 1 375 Miscellaneous Gene Families AT4G10720 41.623 2.23e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0486 - - gmx:100790227 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0500 4 4787673 4789576 Gso6g0486 6 4471773 4474284 GST