Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0500 ATGAACGACTCATTAATTTCAGCTGCGCAAGTCGGTGACATAGACTTGCTCTACAAATTAATTCAGATGCAACCATATGTGTTGGAGCAAACAGATTTCATGCCATTTGTTGATACACCTTTGCATGTTGCAGCTGCTGCTGGCCATGCAAGTTTCGCCACTGAGATCATGAGACTCAAGCCTTCATTTGCATGGAAGCTGAATCCGTGTGGCCTTAGCCCCATGCACCTTGCTTTGCAGAACAAGCATTACAGAATGGTGTGTCGCTTTGTGGACATCAACAAAGACCTTGTTAGAGTCAAAGGGAGGGAGGGTCTCACTCCTTTGCATATTGCAACTCAAACCGGGAGAACTGATCTTGTGGCCAAGTTCTTGTCGGCTTGTCCTGGTTCCATTGAAGATGTGACTGTTCGAAGTGAGACTGCGTTGCATATTGCTGTGAAATATAATCAGTTTCGGGCTTTGGAGGTCTTGGTTGGATGGCTTCAGAGAAACTGCCAAAGACATGCTCAGGACCGGGAAAAAAGAGTTTTAAATTGGCAAGATGAAGCAGGCAACACCGTTCTTCACCTTTCAGTTCTCAAAGGCGTCACACAGGCAGTTGGGTTGTTGATAGACAGCAACATAAACAAAAATGCGAAGAATTTTGAGGACTCAACAGCGTTGGACATGGTGGAGATTAATCAAACTACGGCTCAAAGTGCAGAGATCAGAGATGAGTTAGTTAGAGGAGGAGCTTTACGTGGCTTCTCACTAGCTAATGCTCCACTCCTAGAAGAAGAGCTAAGAGCAAAAATCACATTCAATGAGAGAATAGCAATCTTCGTTACTCGGCTCAGAAAGAGAATATCAATCGACACACGCAATGCTTTGTTGGTGGTTGCTATTCTCTTCGTAACAAGCACATACGGGGCAGTAATTAGCCCCCCAGGTGGAGTTTACCAAGGTGAGGGTAGTAGGGTCACAACCTCAAAGAAGACTAGCGCATCATTGCATCCCCGTGACTACGCAACCCCAGAAATTGTAGGAAAAGTGGTGATGAAAATGCAAACCTTCTTCTGGTTCTGGTCCTTCAATACCTTGTCCTTTTATCTATCAATTTTGATGATATGTTTGCTAATGCCACGAGGGCGCATAAGCGTTATAGTGACTTTCCCACTTTCTATCTTTACTGGGTGCTACGTGTTCTCCATGATGGTGATATCACCCAGTCTCAGGTTAAACACTGCCACTGTGGTTATGCCATGCATATTTATAGTATTTTACTGTTGGGGAAGTTGGATATACATTAGGTTAGCCAAAAAACTTAAAGGATACGGTCATAAACAGAAAGACACGTTCAAGTTTTCAGGAGGAAACAGATGGTAA 1368 0.4393 MNDSLISAAQVGDIDLLYKLIQMQPYVLEQTDFMPFVDTPLHVAAAAGHASFATEIMRLKPSFAWKLNPCGLSPMHLALQNKHYRMVCRFVDINKDLVRVKGREGLTPLHIATQTGRTDLVAKFLSACPGSIEDVTVRSETALHIAVKYNQFRALEVLVGWLQRNCQRHAQDREKRVLNWQDEAGNTVLHLSVLKGVTQAVGLLIDSNINKNAKNFEDSTALDMVEINQTTAQSAEIRDELVRGGALRGFSLANAPLLEEELRAKITFNERIAIFVTRLRKRISIDTRNALLVVAILFVTSTYGAVISPPGGVYQGEGSRVTTSKKTSASLHPRDYATPEIVGKVVMKMQTFFWFWSFNTLSFYLSILMICLLMPRGRISVIVTFPLSIFTGCYVFSMMVISPSLRLNTATVVMPCIFIVFYCWGSWIYIRLAKKLKGYGHKQKDTFKFSGGNRW* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0500 455 Pfam Ankyrin repeats (3 copies) 99 159 IPR002110 GO:0005515
Gso4g0500 455 Pfam Domain of unknown function 286 379 IPR026961 -
Gso4g0500 455 SMART ANK_2a 184 213 IPR002110 GO:0005515
Gso4g0500 455 SMART ANK_2a 138 170 IPR002110 GO:0005515
Gso4g0500 455 SMART ANK_2a 36 65 IPR002110 GO:0005515
Gso4g0500 455 SMART ANK_2a 104 134 IPR002110 GO:0005515
Gso4g0500 455 SMART ANK_2a 70 99 IPR002110 GO:0005515
Gso4g0500 455 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Gso4g0500 455 SUPERFAMILY Ankyrin repeat 5 229 IPR036770 -
Gso4g0500 455 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Gso4g0500 455 Gene3D - 1 236 IPR036770 -
Gso4g0500 455 PANTHER HOMEOBOX PROTEIN WARIAI 10 421 - -
Gso4g0500 455 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Gso4g0500 455 PANTHER ANKYRIN REPEAT PROTEIN 10 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0500 Gso-Chr4 4787673 4789576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0500 1 329 Miscellaneous Gene Families AT4G10720 44.242 1.49e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0500 - - gmx:100790227 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0500 4 4787673 4789576 Gso6g0486 6 4471773 4474284 GST