Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0474 ATGCACTTGCGACTTCGAGCAGCCACTTCCACTGCGAACCCATTCATCCCACCCGCTCACCTCATCCACTCCATCCCTCAATGGTTCTCCATCCTCCGCCACGCCATCGCCGCCTCCGACTTACCCCTCGGAAAGCGCGCCCACGCCCGCATCCTAACTTCCGGCCACCACCCCGACCGCTTCCTCACCAACAACCTCATCACCATGTACTCTAAATGCGGCTCCCTCTCCTCCGCCCGCAAACTGTTCGACACAACGCCCGACACAAGCCGTGATCTTGTTACCTGGAACGCCATCCTCTCCGCCCACGCCGACAAAGCGCGCGACGGCTTCCACCTCTTCCGCCTCCTCCGCCGCTCCTTCGTCTCCGCCACGCGCCACACTCTCGCCCCCGTCTTCAAAATGTGCCTCCTCTCCGCCTCCCCCTCCGCCGCCGAGTCCCTCCACGGCTACGCCGTCAAGATCGGCTTACAATGGGACGTGTTTGTCGCCGGTGCTTTGGTCAACATTTACGCCAAATTCGGACGAATCAGAGAGGCACGCGTTCTGTTCGATGGAATGGGTTTGAGGGACGTTGTTCTCTGGAACGTCATGATGAAAGCTTACGTCGACACTGGTCTCGAATACGAAGCGCTGCTTCTCTTCTCTGAGTTTAACCGAACTGGACTCCGTCCCGATGACGTCACTCTCTGTACTCTCGCGCGGGTTGTGAAAAGTAAACAAAATGTTTTGGAATGGCAGTTGAAGCAGCTTAAAGCTTATGGAACGAAGTTGTTTATGTATGATGATGATGATGATGGTTCGGATGTTATTGCATGGAACAAGACACTGTCTTGGTTTCTTCAGAGAGGTGAAACTTGGGAAGCTGTTGATTGTTTTGTGGATATGATTAACTCGCGTGTTGCCTGTGACGGCTTGACTTTTGTTGTGATGCTGTCTGTGGTTGCCGGTTTGAACTGTCTTGAGCTGGGGAAACAGATTCACGGCATTGTTGTGAGGTCTGGGTTGGATCAAGTTGTCTCTGTTGGGAATTGCCTTATCAATATGTATGTTAAGACTGGCTCCGTTTCTCGTGCAAGGACAGTGTTTTGGCAAATGAATGAAGTGGATTTGGTATCGTGGAACACCATGATATCTGGTTGCGCGCTGAGTGGTTTGGAGGAGTGTTCTGTTGGGATGTTTGTTGATTTATTACGTGGTGGTTTATTGCCGGATCAATTCACTGTTGCGAGCGTTTTGAGGGCTTGTTCCTCTCTTGGAGGAGGTTGCCATCTTGCCACACAGATTCATGCTTGTGCAATGAAAGCTGGTGTTGTCTTGGATTCATTTGTTTCAACAACTCTGATTGATGTGTATTCCAAGAGTGGGAAGATGGAGGAGGCGGAATTTCTTTTTGTTAACCAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGATACATTGTGAGTGGTGATTTTCCTAAGGCATTGAGGCTTTACATTTTAATGCAAGAAAGTGGAGAGAGAGCGAATCAGATTACTCTGGCGAATGCGGCTAAAGCTGCTGGGGGATTAGTGGGGCTTAAACAAGGGAAGCAAATTCAGGCTGTTGTTGTGAAAAGGGGGTTTAATTTAGATTTGTTTGTCATTAGTGGTGTTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGCGCACGGAGAATTTTCAATGAAATACCTTCGCCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGAGCATGCTCTTTTCACGTACCATCATATGAGACTTTCCAAGGTGCAGCCTGATGAGTATACCTTTGCTACCCTTGTCAAGGCTTGCTCTCTTTTAACGGCATTGGAACAAGGGAGACAGATTCATGCAAATACTGTAAAGCTAAACTGTGCATTTGATCCTTTTGTAATGACCTCACTTGTTGACATGTATGCTAAGTGTGGGAATATAGAAGACGCACGTGGTTTGTTTAAAAGAACAAACACGAGTAGGATTGCCTCATGGAATGCCATGATAGTAGGATTAGCTCAACATGGAAATGCTGAGGAAGCCCTTCAGTTTTTCGAAGAGATGAAATCTAGGGGAGTAACACCAGATAGAGTTACTTTTATAGGGGTTCTTTCTGCGTGCAGTCACTCTGGTTTGGTATCTGAAGCCTATGAGAATTTTTATTCCATGCAGAAAATCTATGGTATTGAACCTGAGATTGAGCACTATTCTTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGGATACGAGAAGCTGAAAAGGTGATATCATCAATGCCTTTTGAAGCTTCTGCTTCAATGTATAGAACACTGCTTAATGCTTGTAGGGTTCAGGTAGACAGAGAAACAGGAAAGCGTGTAGCAGAAAAGCTTTTGGCCTTGGAGCCATCTGATTCAGCTGCTTATGTTCTTTTATCCAATGTTTATGCGGCTGCTAACCAATGGGAAAATGTGGCGAGTGCTAGAAATATGATGAGAAAAGCAAATGTGAAGAAGGATCCAGGGTTTAGTTGGGTAGATTTGAAGAACAAGGTGCATTTGTTTGTAGCTGGTGATAGGTCACATGAAGAAACTGATGTTATATATAATAAGGTGGAGTATATCATGAAGAGGATCAGAGAAGAAGGATATCTCCCTGACACAGACTTCGCACTTGTTGATGTAGAAGAAGAAGATAAAGAGTGTTCTTTGTATTATCATAGTGAGAAGCTAGCAATAGCTTATGGGCTTATGAAAACTCCACCATCCACTACATTAAGGGTTATTAAAAACCTCAGAGTGTGTGGAGATTGCCATAATGCAATCAAATATATATCAAAGGTTTTTGAGCGAGAGGTTGTTTTGAGAGATGCAAATCGATTTCATCATTTCAGGAGTGGGGTTTGCTCTTGTGGTGATTACTGGTGA 2946 0.4589 MHLRLRAATSTANPFIPPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0474 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 519 621 IPR011990 GO:0005515
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 23 137 IPR011990 GO:0005515
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 270 419 IPR011990 GO:0005515
Gso6g0474 981 Pfam PPR repeat 647 669 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 372 401 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 193 219 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 549 569 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 344 368 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 475 503 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 64 84 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 446 465 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 166 188 IPR002885 -
Gso6g0474 981 Pfam PPR repeat 748 772 IPR002885 -
Gso6g0474 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Gso6g0474 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Gso6g0474 981 Pfam E motif 793 853 IPR046848 -
Gso6g0474 981 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 220 974 - -
Gso6g0474 981 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 235 - -
Gso6g0474 981 Pfam PPR repeat family 676 721 IPR002885 -
Gso6g0474 981 Pfam PPR repeat family 572 619 IPR002885 -
Gso6g0474 981 Pfam DYW family of nucleic acid deaminases 889 981 IPR032867 GO:0008270
Gso6g0474 981 PANTHER - 220 974 - -
Gso6g0474 981 PANTHER - 29 235 - -
Gso6g0474 981 SUPERFAMILY TPR-like 170 831 IPR011990 GO:0005515
Gso6g0474 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 420 518 IPR011990 GO:0005515
Gso6g0474 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Gso6g0474 981 TIGRFAM PPR: pentatricopeptide repeat domain 749 772 IPR002885 -
Gso6g0474 981 TIGRFAM PPR: pentatricopeptide repeat domain 475 507 IPR002885 -
Gso6g0474 981 TIGRFAM PPR: pentatricopeptide repeat domain 575 609 IPR002885 -
Gso6g0474 981 TIGRFAM PPR: pentatricopeptide repeat domain 677 709 IPR002885 -
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 139 262 IPR011990 GO:0005515
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 737 891 IPR011990 GO:0005515
Gso6g0474 981 Gene3D Tetratricopeptide repeat domain 622 736 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0474 Gso-Chr6 4331836 4336522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0474 269 981 Glycoside Hydrolase AT3G49170 36.602 6.98e-164 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0474 - - gmx:102661570 1952.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0489 4 4621280 4632799 Gso6g0474 6 4331836 4336522 GST