Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0489 ATGAACTTATCCAAGAAAGGACCCCTAAGGGATGCAAAGCTATTAAGCCCAAACAAGGCAACAACTCTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTGCCCTCAGATCATCGTCATTATCTGGAACTACCAGCTCGGTAGATGCAACAGCAAAGCTTTCTGCTGCTGGAGCTCTTGGGAAAGCAGTTTTTGATAGATCAGAATCATCCATTTCAAATAATTCTGATGATGAGGTACACCAATACTGGCGATGTCAGCTCCCTGATGATATCACCCCTGATTTCAAGGTCATGGGAGAAGATGAGTCTCGAGTTCTTGATGATCTTTCTTTAGCAGGCTTATCCATACATGATGACAATGAAGCCTCCAGGTTTCCTTCTTCTAAAGGAAGTAAATATATTATAAATGAGCAGGAGGAAATATCTCAACAGCATGTTAATGGCAATAGCTTGGCAGATAAACTAGGGTTTTCCAATTCAAGCTACAGGGAGGACCCATCTTCTGGAAGCTTTTTGAATGTTCTGGCAAAGCCTTGGGAGGGGCCAATTGGGAGTGCTGACCAGTGTATTAGCAGTGGTCAAGAGGGCCTTACTTATGATGACAACTCTATACATGGATACTTAAATGATGTTTTGGTTGAAAATGCAATTGTGGATGATACTGATCTGAATCCTTTGGAGTTTTTAGCTTCCCTGTTCCCTGGTTTTGCAGCAGAAAGCCTTGCGGAAGCTTACTTTGCTAATGGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGCTTCAAGTTGATGGCGGTTTCAATCAGAATCTGAATTCAAAGACTCTGTCAGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATGGCCAGACTGCTTCAGTAAAATATGTGGTTGATAATGTCCAACAAAGTGGCAATCCTTACCGATCATTTGACAGTGATGTGCTGCTTTTCAAATCTGGCTCTTCAGTTCCATCTGGGGGTGGTGCTATTGAATTTGCTTCAGCTGTTAGGAAGTTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGAAAAAAATGGCTCTGGTGATGCTGCTATCGGCTCAAGTAGGACTTCAAATGTTCTGGCTAGTGATTACAATGGTGGACAGGGGAGAGCACACTTTGTTGATCGGTTACAGAACGTTGGTTCAGCTCGGGCAGCTCCTGTTTGGCTTGAAACCAGTGATGCAGTTGCAAATATGTTTTCAGAGCTGCGGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAGGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGCTGCTCATGGAAAAGCTCAAGAATCCATTTACCGCCAGAGAAATCCAGTTGCTCCAGAGGTGCAGGGCAATGGAAGAGGAAATGAGAGGATAGTAGACCTACATGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCCGAGCAGCGTTTGCAGGTTTATATTCTTGTGGGGACAGGTCATCATACCAGGGGTTCTCGCACTCCTGCGAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCATGGAAACTCAGCCAGGCCTACTACGTGTTGTGATATATGTTCCGAACTCGAAGATGCACTTGCGACTTCGAGCTGCCACTTCCACTGCAAACCCATTGACCCCACGCGCTCACCTCATCCACTCTCTCCCTCAATGCTTCTCCATCCTCCGCCAGGCCATCGCCGCCTCCGACTTATCCCTCGGAAAGCGCGCCCACGCCCGCATCCTCACGTCCGGCCACCACCCCGACCGCTTCGTCACCAACAACCTCATCACCATGTATGCCAAATGCGGCTCCCTTTCCTCCGCGCGCAAACTGTTCGATACAACGCCCGACACCAACCGTGACCTCGTTACCTGGAACGCCATCCTCTCCGCCCTCGCCGCCCACGCTGACAAATCCCACGACGGCTTCCACCTCTTCCGTCTCCTCCGTCGCTCCGTTGTCTCCACCACGCGCCACACTCTCGCCCCCGTCTTCAAAATGTGCCTCCTCTCAGCTTCCCCCTCCGCCTCCGAGTCCCTCCACGGTTACGCCGTCAAGATCGGATTACAATGGGACGTGTTCGTCGCCGGTGCTCTGGTCAACATATATGCCAAATTTGGACTAATCAGAGAGGCACGCGTTCTGTTCGACGGAATGGCTGTGAGAGACGTTGTTCTCTGGAACGTCATGATGAAGGCTTACGTCGACACATGTCTCGAATACGAAGCGATGCTTCTCTTCTCTGAGTTTCATCGAACTGGATTCCGTCCCGATGACGTCACTCTCCGCACTCTCTCGCGGGTTGTTAAATGTAAGAAAAACATTTTGGAATTGAAGCAGTTTAAAGCTTATGCGACGAAGTTGTTTATGTATGATGATGATGGTTCAGATGTTATTGTGTGGAACAAGGCACTGTCTCGGTTTCTTCAGAGAGGTGAAGCTTGGGAAGCTGTTGATTGTTTTGTGGATATGATAAACTCACGTGTTGCGTGTGATGGCTTGACTTTTGTTGTGATGTTGACTGTGGTTGCCGGTTTGAACTGTCTTGAACTGGGGAAACAGATTCACGGCATTGTCATGAGGTCCGGGTTGGATCAAGTTGTCTCTGTTGGGAATTGCCTTATCAATATGTATGTTAAGGCTGGTTCTGTTTCTCGTGCGAGGTCGGTGTTTGGTCAAATGAATGAAGTGGATTTGATATCGTGGAACACCATGATATCTGGTTGCACGCTGAGTGGTTTGGAGGAGTGTTCTGTTGGGATGTTTGTTCATTTATTACGCGACAGTTTATTGCCAGATCAATTCACTGTTGCAAGCGTTTTGAGGGCTTGTTCGTCTCTTGAAGGAGGTTACTATCTTGCCACACAGATTCATGCTTGTGCAATGAAAGCTGGTGTCGTCTTGGATTCGTTTGTTTCAACTGCTCTGATTGATGTCTATTCCAAGCGTGGGAAGATGGAGGAAGCGGAATTTCTTTTTGTTAACCAAGATGGATTTGATTTGGCTTCGTGGAATGCTATAATGCATGGATACATTGTGAGTGGTGATTTTCCTAAGGCATTGAGGCTTTACATTTTAATGCAAGAAAGTGGAGAGAGATCGGATCAGATTACTCTGGTGAATGCAGCTAAAGCTGCTGGGGGATTGGTGGGGCTTAAACAAGGGAAGCAAATTCACGCTGTTGTTGTGAAAAGGGGTTTTAATTTAGATTTGTTTGTCACTAGTGGTGTTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGTGCACGCAGAGTTTTCAGTGAAATACCCTCACCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGAACATGCTCTTTTCACGTACCATCAGATGAGACTTTCCAAGGTGCAGCCTGATGAGTATACCTTTGCTACCCTTGTCAAGGCTTGCTCTCTTTTAACGGCATTGGAACAAGGGAGACAAATTCATGCAAATATTGTAAAGCTAAACTGTGCTTTTGATCCTTTTGTAATGACCTCACTTGTTGACATGTATGCTAAGTGTGGAAATATAGAAGATGCGCGTGGTTTATTTAAAAGAACGAACACGAGGAGGATTGCCTCATGGAATGCCATGATAGTAGGATTAGCTCAACATGGAAATGCCAAGGAAGCCCTTCAGTTTTTCAAATATATGAAATCTAGGGGTGTAATGCCAGATAGAGTTACTTTTATAGGGGTTCTTTCTGCGTGCAGTCACTCTGGTTTGGTATCTGAAGCCTATGAGAATTTTTATTCCATGCAGAAAAACTATGGTATTGAACCTGAGATTGAGCACTATTCTTGTCTAGTTGATGCCCTTAGCCGTGCAGGGCGGATAGAAGAAGCTGAAAAGGTGATATCATCAATGCCTTTTGAAGCTTCTGCTTCAATGTATAGAACATTGCTTAATGCTTGTAGGGTTCAGGTTGACAGAGAGACAGGAAAGCGTGTAGCAGAAAAGCTTTTGGCCTTGGAGCCATCTGATTCAGCTGCTTATGTTCTTTTATCCAATGTTTATGCGGCTGCTAACCAATGGGAAAATGTGGCGAGTGCTAGAAATATGATGAGAAAAGTAAATGTGAAGAAGGATCCTGGGTTTAGTTGGGTAGATTTGAAGAACAAGGTGCATTTGTTTGTAGCCGGTGATAGGTCGCATGAAGAAACTGATGTGATATATAATAAGGTGGAGTATATTATGAAGAGGATCAGAGAAGAAGGCTATGTCCCTGACACAGACTTTGCACTTGTTGATGTAGAAGAAGAAGATAAAGAGTGTTCTTTATATTATCATAGTGAGAAGCTAGCAATAGCGTATGGGCTTATGAAAACTCCACCATCCACTACATTAAGGGTAATTAAAAACCTCAGAGTGTGTGGAGATTGCCATAGTGCAATCAAATATATATCAAAGGTTTTTAAGCGAGAGATTGTTTTGAGAGATGCAAATCGATTTCATCATTTCAGGAATGGGATTTGCTCTTGTGGTGATTACTGGTGA 4695 0.4496 MNLSKKGPLRDAKLLSPNKATTLNPNAAEFVPFALRSSSLSGTTSSVDATAKLSAAGALGKAVFDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVMGEDESRVLDDLSLAGLSIHDDNEASRFPSSKGSKYIINEQEEISQQHVNGNSLADKLGFSNSSYREDPSSGSFLNVLAKPWEGPIGSADQCISSGQEGLTYDDNSIHGYLNDVLVENAIVDDTDLNPLEFLASLFPGFAAESLAEAYFANGCDLHLTTEMLNQLELQVDGGFNQNLNSKTLSAPNLSAMDYPALTSPDGQTASVKYVVDNVQQSGNPYRSFDSDVLLFKSGSSVPSGGGAIEFASAVRKLASQDSGGIWKYEKNGSGDAAIGSSRTSNVLASDYNGGQGRAHFVDRLQNVGSARAAPVWLETSDAVANMFSELREEARDHACLRNAYFEQAQQAYLIGDKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNPVAPEVQGNGRGNERIVDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFMETQPGLLRVVIYVPNSKMHLRLRAATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW* 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0489 1564 Pfam E motif 1376 1436 IPR046848 -
Gso4g0489 1564 CDD CUE_CID7_like 223 265 IPR041806 -
Gso4g0489 1564 PANTHER - 612 827 - -
Gso4g0489 1564 PANTHER - 833 1557 - -
Gso4g0489 1564 TIGRFAM PPR: pentatricopeptide repeat domain 1058 1088 IPR002885 -
Gso4g0489 1564 TIGRFAM PPR: pentatricopeptide repeat domain 1332 1355 IPR002885 -
Gso4g0489 1564 TIGRFAM PPR: pentatricopeptide repeat domain 927 949 IPR002885 -
Gso4g0489 1564 TIGRFAM PPR: pentatricopeptide repeat domain 1158 1192 IPR002885 -
Gso4g0489 1564 TIGRFAM PPR: pentatricopeptide repeat domain 1260 1292 IPR002885 -
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 1319 1477 IPR011990 GO:0005515
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 1207 1318 IPR011990 GO:0005515
Gso4g0489 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1055 1089 IPR002885 -
Gso4g0489 1564 SMART SMR_2 495 579 IPR002625 -
Gso4g0489 1564 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 612 827 - -
Gso4g0489 1564 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 833 1557 - -
Gso4g0489 1564 ProSiteProfiles Smr domain profile. 498 579 IPR002625 -
Gso4g0489 1564 Gene3D - 465 579 IPR036063 -
Gso4g0489 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat family 1258 1304 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat family 1155 1202 IPR002885 -
Gso4g0489 1564 Pfam DYW family of nucleic acid deaminases 1472 1564 IPR032867 GO:0008270
Gso4g0489 1564 Pfam Domain of unknown function (DUF1771) 419 481 IPR013899 -
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 730 844 IPR011990 GO:0005515
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 1003 1104 IPR011990 GO:0005515
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 1106 1206 IPR011990 GO:0005515
Gso4g0489 1564 Pfam PPR repeat 780 809 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 1029 1048 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 1058 1086 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 955 981 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 927 951 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 648 668 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 1230 1252 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 1331 1355 IPR002885 -
Gso4g0489 1564 Pfam PPR repeat 753 776 IPR002885 -
Gso4g0489 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1328 1362 IPR002885 -
Gso4g0489 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1156 1190 IPR002885 -
Gso4g0489 1564 SMART DUF1771_2 417 482 IPR013899 -
Gso4g0489 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1257 1291 IPR002885 -
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 596 729 IPR011990 GO:0005515
Gso4g0489 1564 Gene3D Tetratricopeptide repeat domain 853 1002 IPR011990 GO:0005515
Gso4g0489 1564 SUPERFAMILY SMR domain-like 496 577 IPR036063 -
Gso4g0489 1564 SUPERFAMILY TPR-like 652 1414 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0489 Gso-Chr4 4621280 4632799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0489 852 1564 Glycoside Hydrolase AT3G49170 36.602 3.84e-159 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0489 - - gsj:114408324 3076.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0489 4 4621280 4632799 Gso6g0474 6 4331836 4336522 GST