Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0440 ATGGCGGATCCCTATTACTCATACGGTGCTCCGGCAGCCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATTCCCTCTGAGCCTTCAAATTCCACCACTGAATTGAGGAGCATTGGGTCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATACCTTCGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTTGCAGATCCTGATCCGAGTAAAAAACGAGATACAACGCCTTTGAGCATTACTCATGGTGTTCCTGATGTAAACAGTGAAAGACCAGCCTCTAAAAGCAGTTATGATGGTCTACCAATTTCAGCAGCAGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAATGACTGCACTAGAAGGGAAGTCGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCCAAATGTGCTCTCACTGCCATGGAAGCCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCGCCAACATTAAAAATAGAGTTTGCACACTTTCCTTTCCGTCTACCATCTGATCATGGCAGCAGCTTATCAACAAGATACACACTGACGGGACATTGA 687 0.4556 MADPYYSYGAPAAADGASIARSSFAGYIPSEPSNSTTELRSIGSDYLQRDIGLFYSADDTFGSRVHSEPVKGYSPLADPDPSKKRDTTPLSITHGVPDVNSERPASKSSYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTAMEALQGYKFDDKKPDSPTLKIEFAHFPFRLPSDHGSSLSTRYTLTGH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0440 228 SUPERFAMILY RNA-binding domain, RBD 89 194 IPR035979 GO:0003676
Gso6g0440 228 MobiDBLite consensus disorder prediction 69 110 - -
Gso6g0440 228 PANTHER PROTEIN COUCH POTATO 13 213 - -
Gso6g0440 228 SMART rrm1_1 122 203 IPR000504 GO:0003723
Gso6g0440 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 207 IPR000504 GO:0003723
Gso6g0440 228 Gene3D - 116 207 IPR012677 -
Gso6g0440 228 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 213 - -
Gso6g0440 228 CDD RRM_RBPMS_like 121 203 - -
Gso6g0440 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0440 Gso-Chr6 4091378 4094641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0440 - - gmx:100809186 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0461 4 4370845 4373982 Gso6g0440 6 4091378 4094641 GST