Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0461 ATGGCGGACCCCTACTACTCATACGGTGCTCCGGTAGGCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATCCCCTCTGAGCCTTCAAATTCCACTGAATTGAGGGGCATTGGATCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATACCTTGGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCGCCTCTTGCAGATCCTGGTCTGAGTAAAAAACGAGATACAACACCATTGGGCATTAATAATGGTGTTCCTGATGTAAGCAGTGAAAGACCAGCTTCTAAAAGCAGTTATGACGGTCTACCAATTTCGGCGGCAGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAAAGACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAAGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCCAATTGTGCTCTCACTGCCCTGGAAACCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCACCAACTTTAAAAATACAGCTTGCACACTTTCCTTTCCGGCTACCATCTGATCATGGCAACAGCTTATCAACATGA 663 0.457 MADPYYSYGAPVGADGASIARSSFAGYIPSEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPGLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSNCALTALETLQGYKFDDKKPDSPTLKIQLAHFPFRLPSDHGNSLST* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0461 220 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 12 212 - -
Gso4g0461 220 PANTHER PROTEIN COUCH POTATO 12 212 - -
Gso4g0461 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 206 IPR000504 GO:0003723
Gso4g0461 220 SUPERFAMILY RNA-binding domain, RBD 88 193 IPR035979 GO:0003676
Gso4g0461 220 SMART rrm1_1 121 204 IPR000504 GO:0003723
Gso4g0461 220 CDD RRM_RBPMS_like 120 202 - -
Gso4g0461 220 MobiDBLite consensus disorder prediction 65 107 - -
Gso4g0461 220 MobiDBLite consensus disorder prediction 86 106 - -
Gso4g0461 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 193 IPR000504 GO:0003723
Gso4g0461 220 Gene3D - 115 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0461 Gso-Chr4 4370845 4373982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0461 - - gmx:100816255 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0461 4 4370845 4373982 Gso6g0440 6 4091378 4094641 GST