Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0405 ATGATTCAAAGAACTGTGTCCTTTCCCAGTTTAAGGAAATTGCTTCTTCGGGCTGGTTGTTCTAAATCTGCTTCGTCCAAGATCGGAACTTACAATTGCTTTGCTTCTCAGTCCTCCCCTCTACCGAGCCACAACCCTAGTTACCGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGCCCACTGATTATATGTATATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGTGTCCTAAATTATGGTCAGGGTTTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGACTGGTGCCCAAAGAATGTGCATGGCATCGCCTTCCATTGATCATTTTGTTGATGCTTTGAAGCAAACTGTCTTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCGGTTTTGGGTTTGGCTCCTGCACCTGAATACACATTCCTCATATTTGCTTCCCCTGTTCGCAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAAAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGACACCAAGAAAAATCTCGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACTAATGGAACTATTCTTTCCGGAATTACCCGAAAAAGTGTCATTGAAATTGCTCGCGATCATGGCTATCAGGTAGAAGAGCGTGCTGTTGCCGTGGATGAATTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGCTGAACAATACCATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTCGAAGTTGATTAA 1167 0.4456 MIQRTVSFPSLRKLLLRAGCSKSASSKIGTYNCFASQSSPLPSHNPSYRDDEYADVDWDSLGFGLMPTDYMYITKCCEGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMKTGAQRMCMASPSIDHFVDALKQTVLANKRWVPPPGKGSLYLRPLLLGTGPVLGLAPAPEYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASSRGTGNVKTISNYAPVLMAQIQAKKRGFSDVLYLDSDTKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYQVEERAVAVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICQELNNTISGIQTGTIEDKKGWIVEVD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0405 388 Pfam Amino-transferase class IV 107 345 IPR001544 GO:0003824
Gso6g0405 388 PANTHER AMINO ACID AMINOTRANSFERASE 3 388 IPR005786 GO:0004084|GO:0009081
Gso6g0405 388 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 3 388 - -
Gso6g0405 388 PIRSF BCAT1 37 388 IPR005786 GO:0004084|GO:0009081
Gso6g0405 388 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 48 384 IPR036038 GO:0003824
Gso6g0405 388 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 84 387 IPR005786 GO:0004084|GO:0009081
Gso6g0405 388 CDD BCAT_beta_family 94 375 IPR033939 GO:0004084|GO:0009081
Gso6g0405 388 Gene3D - 216 387 IPR043132 -
Gso6g0405 388 ProSitePatterns Aminotransferases class-IV signature. 271 300 IPR018300 GO:0003824
Gso6g0405 388 Gene3D - 36 215 IPR043131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0405 Gso-Chr6 3782225 3789835 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0405 K00826 - gmx:100782644 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0424 4 3980690 3988518 Gso6g0405 6 3782225 3789835 GST