Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0424 ATGATTCAAAGAATTGTGTACTTTCCCAGTTTAAGGAAATTGCTTCTTCGGGCTGGTTCTAATTCTGCTTCGTCCAAGATCGGAACGAACAATTGCTTTGCTTCTCAGCCCTCCCCTCTTCGGAGTCACAGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAGCTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAACTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGTCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAA 1152 0.4366 MIQRIVYFPSLRKLLLRAGSNSASSKIGTNNCFASQPSPLRSHSDDEYADVDWDSLGFGLMTTDYMYITKCCEGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMKIGAERMCMASPSIDNFVDALKQTVLANKRWVPPPGKGSLYLRPLLLGTGPVLGLAPAPQYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASSRGTGNVKTISNYAPVLMAQIQAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYQVEERVVNVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICQELNNTISGIQTGTIEDKKGWIVEVD* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0424 383 PANTHER AMINO ACID AMINOTRANSFERASE 15 383 IPR005786 GO:0004084|GO:0009081
Gso4g0424 383 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 15 383 - -
Gso4g0424 383 CDD BCAT_beta_family 89 370 IPR033939 GO:0004084|GO:0009081
Gso4g0424 383 Gene3D - 29 210 IPR043131 -
Gso4g0424 383 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 79 382 IPR005786 GO:0004084|GO:0009081
Gso4g0424 383 PIRSF BCAT1 33 383 IPR005786 GO:0004084|GO:0009081
Gso4g0424 383 Pfam Amino-transferase class IV 102 340 IPR001544 GO:0003824
Gso4g0424 383 ProSitePatterns Aminotransferases class-IV signature. 266 295 IPR018300 GO:0003824
Gso4g0424 383 Gene3D - 211 382 IPR043132 -
Gso4g0424 383 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 42 379 IPR036038 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0424 Gso-Chr4 3980690 3988518 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0424 K00826 - gmx:100818776 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0424 4 3980690 3988518 Gso4g0424 4 3980690 3988518 ECH
Gso4g0424 4 3980690 3988518 Gso6g0405 6 3782225 3789835 GST