Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0376 ATGCACAAGCAAACGCATACGCATGTGTGGAAGCGGATCAGAGACAGGGAAGCTGGGAAACTGCATGCAAGCCATTTCGCCAACCGCATAAAATGGAATCGCATTTCGCAACTCCAATTATCCAATCACAAAGACATCGTCTCACCTCACAAAGGCGCCATCAACTCCCTTCAGATTGATTCCACGGAGGGAAGATATTTGCTATCCGCCGCCTCCGATGCCTCGGTAGCAGTCTACGACGTCCAACGACCCACCGTTTACGAAGCCGGCGGCGTCATTTCGAAACACAGCTCTATATTTGTCGTTGACAAGCAGCACCAGCAAGCCCATAAATATGCGGTTTCCTCAGCTATATGGTATCCCATTGACACCGGCTTGTTCGTCACTGGCTCATACGATCACCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTAAATTTCAAAATGCCTGGAAAGGTTCATAGGGCTGCAATGTCCAATTTATCAACATCTCACATGCTTATTGCTGCTGCCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCCGGAGCCTTTGCTCACACTTTGTCCGGTCACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGCGCTGGCTGTTTCCAAGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCAACCATACTCAATCACTCCATGATAACTAAGGATTCAAGTACAAAATTGAGTGCTGCGCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACTAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAAATTACATCCAGGAATGTTGTCTACTCAGGATCGTGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCCACAGAGGATGGCATGTATCTACTAAGTGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATGTTGAATCTGGCTGTGACACACTTGTGAACTTCGAAACAGTTCGCCTGCAAGTAAACAAACCTCTTCAACTAGCCACCACTCAAGATTCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTACGTGGTCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGGTCAATGGCTGATGAAATGGACGAAGGACCTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1344 0.4635 MHKQTHTHVWKRIRDREAGKLHASHFANRIKWNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGVISKHSSIFVVDKQHQQAHKYAVSSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRPTILNHSMITKDSSTKLSAAQKKHANGSGSRQQLIGRVPSKGPMKQKLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQVNKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSMADEMDEGPAEDQDNWSS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 425 - -
Gso6g0376 447 ProSitePatterns Trp-Asp (WD) repeats signature. 214 228 IPR019775 -
Gso6g0376 447 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 11 447 IPR042238 GO:0006283
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515
Gso6g0376 447 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Gso6g0376 447 Gene3D - 10 428 IPR015943 GO:0005515
Gso6g0376 447 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Gso6g0376 447 PRINTS G protein beta WD-40 repeat signature 214 228 IPR020472 -
Gso6g0376 447 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 89 IPR001680 GO:0005515
Gso6g0376 447 SUPERFAMILY WD40 repeat-like 47 427 IPR036322 GO:0005515
Gso6g0376 447 MobiDBLite consensus disorder prediction 262 282 - -
Gso6g0376 447 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Gso6g0376 447 Pfam WD domain, G-beta repeat 192 227 IPR001680 GO:0005515
Gso6g0376 447 Pfam WD domain, G-beta repeat 122 140 IPR001680 GO:0005515
Gso6g0376 447 Pfam WD domain, G-beta repeat 390 425 IPR001680 GO:0005515
Gso6g0376 447 SMART WD40_4 386 425 IPR001680 GO:0005515
Gso6g0376 447 SMART WD40_4 95 140 IPR001680 GO:0005515
Gso6g0376 447 SMART WD40_4 296 338 IPR001680 GO:0005515
Gso6g0376 447 SMART WD40_4 40 80 IPR001680 GO:0005515
Gso6g0376 447 SMART WD40_4 187 227 IPR001680 GO:0005515
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 149 IPR001680 GO:0005515
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 229 - -
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Gso6g0376 447 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Gso6g0376 447 MobiDBLite consensus disorder prediction 262 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0376 Gso-Chr6 3511595 3515696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0376 105 234 Miscellaneous Gene Families AT5G08390 25.758 4.99e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0376 K10570 - gmx:100790433 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0398 4 3630399 3634179 Gso6g0376 6 3511595 3515696 GST