Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0398 ATGCATAAGCAAACGCATAGGCATGTGTGGAAGCGGATCAGAGACAGGGAAGCTGGGAAATTGCGTGCAAACCATTTCGCGAACCGCATAAAATCCAATCGCATTTCGCAACTCCAGTTGTCCAATCACAAAGACATTGTCTCACCTCACAAAGGCGCCATCAACTCCCTTCAGGTTGATTCGACAGAGGGAAGATATTTGCTATCCGCTGCCTCCGATGCCTCGGTAGCAGTGTACGACGTCCAACGACCCACCGTTTACGAAGCAGGCGGCGGCGGCGGCGGCGGCATATCGAAACACAGCTCCATATTTGTCGTTGACAAGCAGCATCAGCAAGGCCATAAATATGCGGTGTCCACAGCTATTTGGTATCCCATTGACACTGGCTTGTTCGTCACTGGCTCTTACGATCATCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTTCATAGGGCTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCTGCTGCCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGTCACCGTGATGGAGTTATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGCGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGCTCCATGATAACTAAGGATTCAAGTACAAAATTGCGTGCTGCTCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGATTACATACAGGAATGTTGTCTACTCAGGATCGTGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACTGAGGATGGCATGTATCTACTAAGTGCAGGGTCTGATTCTAGATTGAGGTTGTGGGATGTTGAATCTAGCTGCAACACACTTGTGAACTTTGAAACAGTTCGTCTGCAAATAAACAAACCTCTTCAACTAGCCACCACTCAAGATTCAGCCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTGCGTGGTCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACATGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATCGCTGATGAAATGGAAGGAACTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1353 0.4656 MHKQTHRHVWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLHTGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESSCNTLVNFETVRLQINKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYTGGNDRQILVWSPARSIADEMEGTAEDQDNWSS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 240 IPR001680 GO:0005515
Gso4g0398 450 MobiDBLite consensus disorder prediction 266 295 - -
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 233 - -
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 153 IPR001680 GO:0005515
Gso4g0398 450 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Gso4g0398 450 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Gso4g0398 450 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 89 IPR001680 GO:0005515
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 351 IPR001680 GO:0005515
Gso4g0398 450 Pfam WD domain, G-beta repeat 311 342 IPR001680 GO:0005515
Gso4g0398 450 Pfam WD domain, G-beta repeat 196 231 IPR001680 GO:0005515
Gso4g0398 450 Pfam WD domain, G-beta repeat 394 429 IPR001680 GO:0005515
Gso4g0398 450 Pfam WD domain, G-beta repeat 112 144 IPR001680 GO:0005515
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Gso4g0398 450 Gene3D - 10 432 IPR015943 GO:0005515
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 429 IPR001680 GO:0005515
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 111 147 - -
Gso4g0398 450 SUPERFAMILY WD40 repeat-like 47 431 IPR036322 GO:0005515
Gso4g0398 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 429 - -
Gso4g0398 450 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Gso4g0398 450 SMART WD40_4 303 342 IPR001680 GO:0005515
Gso4g0398 450 SMART WD40_4 99 144 IPR001680 GO:0005515
Gso4g0398 450 SMART WD40_4 390 429 IPR001680 GO:0005515
Gso4g0398 450 SMART WD40_4 191 231 IPR001680 GO:0005515
Gso4g0398 450 SMART WD40_4 40 80 IPR001680 GO:0005515
Gso4g0398 450 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 11 450 IPR042238 GO:0006283
Gso4g0398 450 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0398 Gso-Chr4 3630399 3634179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0398 50 247 Miscellaneous Gene Families AT5G08390 19.635 3.45e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0398 K10570 - gmx:100815581 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0398 4 3630399 3634179 Gso4g0398 4 3630399 3634179 ECH
Gso4g0398 4 3630399 3634179 Gso6g0376 6 3511595 3515696 GST