Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0325 ATGAAACCTAATCTGTCTCTCATTCACTCTCTATTCCATGATGCAAGCTCTGCACTCCTCATCTTTCGACAACTTTTACAGTCTAGTGCCAACCCCAACCATCTTACCTTTTCTTTACTCATCAAAGCGTGCCTTTCTTCCTCTTCTTCTTTCTCGCGTGGATCACCCACTGCCTGGCTACAAGTAAACCAGATTCAAACCCAGTTGTTGAAACGGGGCATTGACCAATTTCTATATGTAAACACCGCTCTCATTGACTTCTACATGAAACTTGGCTTCACTACCCATGCACGCCAACTGTTCGAAGATTTGCCTTCTGCAGATGTTGTTTCATGGAATGTATTGATTTGTGGATATTCACAACATGGGCATCCTCATGACGCCCTTCAACTCTTTGTCCACATGCTAAGAGAGAGTTTCAGACCTAACCAAACAACTATTGCTAGTTTGTTACCATCTTGTGGTCGCCGTGAACTTTTCCTTCAAGGTAGATCCGTTCACGCATTTGGAATCAAAGCTGGTCTGGGTTTGGATCCTCAGTTGAGTAATGCACTTACCTCAATGTATGCTAAATGTGATGACTTGGAAGCATCCCAACTCTTGTTTCAAGAAATGGGTGAGAAAAATGTTATCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTTTCGAGGACAAGGCAGTTTTGTGCTTTAAAGAGATGCTGAAGGAAGGTTGGCAACCCAGTCCAGTGACAATGATGAACCTTATGTCAGCTAATGCAGTTCCGGAAACTGTCCATTGCTATATTATCAAATGTGGCTTCACCGGTGATGCATCTGTTGTTACCTCACTAGTTTGTCTATATGCAAAGCAAGGGTTCACTGATATGGCAAAATTGCTTTACGAATGTTATCCCACCAAAGACCTGATTTCGTTAACTGGGATAATCTCTAGCTATTCTGAAAAGGGCGAGGTAGAATCTGCGGTTGAGTGTTTTATCCAAACTCTGAAGTTAGACATAAAACCAGATGCAGTTGCCTTGATTAGTGTCCTTCATGGAATTAGTGATCCTTCTCATTTTGCTATTGGATGTGCTTTCCATGGTTATGGGTTGAAGAATGGGCTGACTAATGATTGCTTAGTTGCAAATGGGCTAATAAGCTTTTATTCAAGATTTGATGAGATATTAGCTGCTTTGTCTTTGTTTTTTGACAGGAGTGAAAAACCGTTGATCACTTGGAATTCTATGATATCTGGCTGCGTTCAGGCTGGAAAATCAAGTGATGCCATGGAGTTGTTCTGCCAAATGAACATGTGTGGACAAAAACCAGATGCAATTACTATCGCTAGTCTACTATCAGGGTGTTGCCAGCTTGGGTACTTGCGGATTGGAGAGACACTGCATGGCTATATCCTTAGAAACAATGTGAAAGTTGAAGATTTTACAGGAACTGCTCTAATAGATATGTATACTAAGTGTGGAAGATTAGATTATGCTGAAAAGATATTTTATAGCATCAATGATCCATGTTTGGTAACATGGAACTCCATCATATCGGGTTACAGTTTATATGGACTTGAACACAAAGCTTTCGGTTGTTTTTCTAAACTGCAAGAACAAGGGCTAGAACCTGATAAAATCACTTTCTTGGGAGTTTTAGCAGCATGCACTCATGGAGGACTTGTCTACGCAGGAATGGAATACTTTCGTATCATGAGAAAAGAGTATGGTTTGATGCCAACTTTGCAGCATTATGCTTGCATTGTTGGCCTCTTGGGTCGGGCAGGGTTGTTCAAGGAAGCAATTGAAATTATTAACAACATGGAAATTCGGCCTGATTCTGCTGTATGGGGGGCACTGTTAAGTGCTTGTTGGATTCAACAGGAAGTAAAGCTTGGGGAATGCTTGGCCAAAAATTTGTTTTTATTGAATTACAAAAACGGGGGATTTTATGTATCATTGTCAAATCTTTATGCGATTGTTGGGAGGTGGGATGACGTAGCAAGGGTGAGGGATATGATGAGAGACAGTGGAGGAGATGGATCTTCAGGTGTTAGTGTTATTGAAGTGACACCCCTCAGAGACATCAATAACAACTTGTGCCCGAGTGAGGTCTATTTGAATACAAGCACTTGGCAGCATTTGTGTCTATGTTGA 2145 0.4131 MKPNLSLIHSLFHDASSALLIFRQLLQSSANPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVNQIQTQLLKRGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLRESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAVPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNMEIRPDSAVWGALLSACWIQQEVKLGECLAKNLFLLNYKNGGFYVSLSNLYAIVGRWDDVARVRDMMRDSGGDGSSGVSVIEVTPLRDINNNLCPSEVYLNTSTWQHLCLC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0325 714 Pfam PPR repeat family 108 154 IPR002885 -
Gso6g0325 714 Pfam PPR repeat family 505 552 IPR002885 -
Gso6g0325 714 Pfam PPR repeat family 407 453 IPR002885 -
Gso6g0325 714 Pfam PPR repeat 582 605 IPR002885 -
Gso6g0325 714 Pfam PPR repeat 183 210 IPR002885 -
Gso6g0325 714 Pfam PPR repeat 480 500 IPR002885 -
Gso6g0325 714 Pfam PPR repeat 211 240 IPR002885 -
Gso6g0325 714 Pfam PPR repeat 307 330 IPR002885 -
Gso6g0325 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Gso6g0325 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 35 206 - -
Gso6g0325 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 204 298 - -
Gso6g0325 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 301 713 - -
Gso6g0325 714 Gene3D Tetratricopeptide repeat domain 165 259 IPR011990 GO:0005515
Gso6g0325 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Gso6g0325 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Gso6g0325 714 PANTHER OS07G0578800 PROTEIN-RELATED 301 713 IPR045215 GO:0003723|GO:0009451
Gso6g0325 714 PANTHER OS07G0578800 PROTEIN-RELATED 35 206 IPR045215 GO:0003723|GO:0009451
Gso6g0325 714 PANTHER OS07G0578800 PROTEIN-RELATED 204 298 IPR045215 GO:0003723|GO:0009451
Gso6g0325 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Gso6g0325 714 Gene3D Tetratricopeptide repeat domain 260 355 IPR011990 GO:0005515
Gso6g0325 714 Pfam E motif 625 685 IPR046848 -
Gso6g0325 714 TIGRFAM PPR: pentatricopeptide repeat domain 407 441 IPR002885 -
Gso6g0325 714 TIGRFAM PPR: pentatricopeptide repeat domain 110 143 IPR002885 -
Gso6g0325 714 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Gso6g0325 714 TIGRFAM PPR: pentatricopeptide repeat domain 508 541 IPR002885 -
Gso6g0325 714 Gene3D Tetratricopeptide repeat domain 505 687 IPR011990 GO:0005515
Gso6g0325 714 Gene3D Tetratricopeptide repeat domain 10 164 IPR011990 GO:0005515
Gso6g0325 714 Gene3D Tetratricopeptide repeat domain 356 504 IPR011990 GO:0005515
Gso6g0325 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0325 Gso-Chr6 3006157 3008436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0325 33 686 Glycoside Hydrolase AT3G49170 28.657 5.79e-94 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0325 - - gmx:100787089 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0343 4 3071927 3074379 Gso6g0325 6 3006157 3008436 GST