Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0343 ATGAAACCTAATCTGTCTCTCTTTCACTCTCTATTCCATGATGCAAGCTGTGCACTCCTCATCTTTCGACAACTGCTACAGTCTAATGCCAATCCCAACCATCTTACCTTTTCTTTACTCATCAAAGCGTTCCTCTCTTCCTCTTCTTTTTCTCGTGGATCACCAACTACGAGGATACAAGTAAACCAGATTCCAACCCAGTTGTTGAAACGGGGCATTGACCAATTTCTATATGTAAACACCGCTCTCATTGACTTCTACATGAAACTTGGGTTTACCACTCACGCACGCCAACTGTTTGAAGATTTGCCTTCTACAGATGTTGTTTCATGGAACGTTTTGATTTGTGGATATACACAAAATGGGCATCCTCATGATGCCCTTCAACTCTTTGTCCACATGCTAAGAGAGAGTTTCAGACCTAACCAAATAACAATTGCTAGTTTGTTACCATCTTGTGGTCACCGTGAACTTTTCCTTCAAAGTAGATCTGTTCACGCGTTTGGAATCAAAGCTGGCCTTGGTTTGGATCCTCAGTTGAAGATGGGTGAGAAAAATGTTATCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTTTTGAGGACAAGGCAGTGTTGTGCTTTAAAGAGATGCTGAAGGAAGGTTTGCTACCCAGTCCAGTGACAATGATGAAACTTATGTCAGCTGATGCAGTTGCAGAAACTGTCCATTGCTATATTATCAAATGTGGCTTCACCAGTGATGCTTCTGTTCAAGGGTTCACTGATATGGCGAAATTGATTTACGAATATTATCCCACAAAAGACCTGATTTCATTAACTGGGATAATCTCTAGCTATTCTGAAAAAGGCGAGGTAGAATCTGTGGTTCAGGGTTTTATCCAAACTGTGCAGTTAGACATAAAACCAGATGCAGTTGCCTTGATTAGAGTCCTTCATGGAATTAGTGATCCTTCTCATTTTGCTATTGGATGTGCTTTCCATGGTTATGGATTGAAGAGTGGGCTGAATAATGATTGCTTAGTTGCAAATGGGTTAATAAGCACGTATTCAAGATTTGATGAGATACAAGCTGCTTTGTCTTTGTTTTTTGACAGGAGAGAAAAACCATTGATCACTTGGAATTCTGTGATATCTGGCTGTGTTCAGGCTGGAAATTCAAGTGATGCCATGGAGTTGTTCTTCCAAATGAACATGTGTGGACAAAAACCAGATGCAATTACTATCACTAGTCTACTATCGGGGTGTTGCCAGCTTGGGTACTTGCAGATTGGAGAGACACTTCATGGTTATATCCTTAGAAACAATTTGAAAGTGGAAGATTTTACAGTAACTGCTCTAATAGATATGTATACTAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTATAGCATCAATGATCCGAGGGCGAGCCCTGGTGCAGCGGTAAAGTTGTGCCTTGGTGACTTGTTGGTCATGGGTTCGAATCCGGAAACAGCCTCTTTGCATATGCAAGGTTTATATGGACTTGAACACAAAGCTTTCAGTTGTTTTTCTAAACTACAAGAACAAGGACTAGAACCTGATAAAATCACTTTCTTGGGAGTTTTAGCAGCTTGCACCCATGGAGGACTTGTCTATGCAGGAATGGAATACTTTCGTATCATGAGAGAAGAGTATGGTTTGATGCCAACTTTGCAGCATTATGCTTGCCTAGTTGGCCTCTTGGGTCGGGCAGGGTTGTTCAAGGAAGCAATTGATATTATTAACAACATGGAAATTCGGCCTGATTCTGCTGTCTGGGTAGCATTGCTAAGTGCTTGTTGGATTCAACAGGAAGTAAAGCTTGGCCAAAAATTTGTTTTTATTGAATTACAAAAACGGTGGATTTTATGTATTAATGTCAAATCTTTATGCGATTGTTGGGAGGTGGGATGA 1929 0.4054 MKPNLSLFHSLFHDASCALLIFRQLLQSNANPNHLTFSLLIKAFLSSSSFSRGSPTTRIQVNQIPTQLLKRGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSTDVVSWNVLICGYTQNGHPHDALQLFVHMLRESFRPNQITIASLLPSCGHRELFLQSRSVHAFGIKAGLGLDPQLKMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGLLPSPVTMMKLMSADAVAETVHCYIIKCGFTSDASVQGFTDMAKLIYEYYPTKDLISLTGIISSYSEKGEVESVVQGFIQTVQLDIKPDAVALIRVLHGISDPSHFAIGCAFHGYGLKSGLNNDCLVANGLISTYSRFDEIQAALSLFFDRREKPLITWNSVISGCVQAGNSSDAMELFFQMNMCGQKPDAITITSLLSGCCQLGYLQIGETLHGYILRNNLKVEDFTVTALIDMYTKCGRLDYAEKVFYSINDPRASPGAAVKLCLGDLLVMGSNPETASLHMQGLYGLEHKAFSCFSKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMREEYGLMPTLQHYACLVGLLGRAGLFKEAIDIINNMEIRPDSAVWVALLSACWIQQEVKLGQKFVFIELQKRWILCINVKSLCDCWEVG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0343 642 Gene3D Tetratricopeptide repeat domain 10 170 IPR011990 GO:0005515
Gso4g0343 642 Gene3D Tetratricopeptide repeat domain 490 631 IPR011990 GO:0005515
Gso4g0343 642 Gene3D Tetratricopeptide repeat domain 324 482 IPR011990 GO:0005515
Gso4g0343 642 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 263 616 - -
Gso4g0343 642 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 181 254 - -
Gso4g0343 642 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 41 181 - -
Gso4g0343 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Gso4g0343 642 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Gso4g0343 642 TIGRFAM PPR: pentatricopeptide repeat domain 188 221 IPR002885 -
Gso4g0343 642 TIGRFAM PPR: pentatricopeptide repeat domain 109 142 IPR002885 -
Gso4g0343 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Gso4g0343 642 Pfam PPR repeat family 374 420 IPR002885 -
Gso4g0343 642 Pfam PPR repeat family 107 153 IPR002885 -
Gso4g0343 642 PANTHER OS07G0578800 PROTEIN-RELATED 263 616 IPR045215 GO:0003723|GO:0009451
Gso4g0343 642 PANTHER OS07G0578800 PROTEIN-RELATED 41 181 IPR045215 GO:0003723|GO:0009451
Gso4g0343 642 PANTHER OS07G0578800 PROTEIN-RELATED 181 254 IPR045215 GO:0003723|GO:0009451
Gso4g0343 642 Pfam PPR repeat 566 590 IPR002885 -
Gso4g0343 642 Pfam PPR repeat 188 218 IPR002885 -
Gso4g0343 642 Pfam PPR repeat 444 467 IPR002885 -
Gso4g0343 642 Gene3D Tetratricopeptide repeat domain 181 323 IPR011990 GO:0005515
Gso4g0343 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0343 Gso-Chr4 3071927 3074379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0343 33 615 Glycoside Hydrolase AT3G49170 25.596 2.10e-64 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0343 - - gsj:114408704 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0343 4 3071927 3074379 Gso4g0343 4 3071927 3074379 ECH
Gso4g0343 4 3071927 3074379 Gso6g0325 6 3006157 3008436 GST