Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0233 ATGTTGATTCGACGATTGCCTTGGACGGCGATTTCTTTTGCCGCACCACTTCCCTTCTGTTTCGGCGCTACCAATGGACTTCCCATTCGCAAGCAACTTAACTCTTCTCTCTTCTCCTTCTTCTGCTCCAGCTCCGGCGTCAATCTCCCTCTACAACCTGGTCACGAAACGGATACTCGTCACTCGCAGTCTCTGAAACCCGGTCTTTACCTCGTTGGAACGCCAATCGGAAATCTCGAAGATATCACACTGAGGGCTATTCGCGTGCTGAACTCGGCTGACGTCATACTCTCAGAGGACACTAGGCACTCTGGGAAGTTGCTTCATCACTACAACATCAAAACACCCCTTATGAGTTATCACAAGTTCAATGAATCGCATAGGGAACAGCTTGTGCTGAGGAGGTTGAAGCAGGGTGAGATTGTGGCTCTCATAAGTGATGCTGGAATGCCAGGTATAAGTGATCCTGGTACGGAGTTGGCCAAATTGTGTGTTAGTGAGAATATCCTGGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTGTCGGCTCTTTCTGCCTCGGGTTTACCTACTGACGAATTTACATTTGTTGGTTTTCTTCCTAAGCATTCGGGATCGAGAAGAAAAAGGCTCATGGTTTCAGCTGATCAAACAACAACACAAATATTTTACGTTCCTCCTCACAAGCTTTCTCAGTTCCTTGATGAGAGTTCTTCAATTTTTGGTGATGCAAGGCAATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAAGAGTTTTGGCATGGTACTCTTGGTGAAGCCAAGGAAGTATTTTCTATTCGTCAAGTGAAGGGAGAACTTACCATATTGATCGAAGGGAAAGCAAATTCTAAAGTTGAACCTCCGTCAGACACTGAGCTTGAGAGTGAACTAAGAGAACTGATTGCTGGTGGCGAGAGTCTTTCCACGGCTGTCAAATTGGTTACCAGCCGGACATCAGTGAGTAGAAAAACTATATATTCACTTGCATTAAGAAAGTTTGGGAAGCAACTTGAAGTGGATGATGATTCAAATTAG 1059 0.4523 MLIRRLPWTAISFAAPLPFCFGATNGLPIRKQLNSSLFSFFCSSSGVNLPLQPGHETDTRHSQSLKPGLYLVGTPIGNLEDITLRAIRVLNSADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESHREQLVLRRLKQGEIVALISDAGMPGISDPGTELAKLCVSENILVVPIPGPCALVSALSASGLPTDEFTFVGFLPKHSGSRRKRLMVSADQTTTQIFYVPPHKLSQFLDESSSIFGDARQCVIAREMTKLHEEFWHGTLGEAKEVFSIRQVKGELTILIEGKANSKVEPPSDTELESELRELIAGGESLSTAVKLVTSRTSVSRKTIYSLALRKFGKQLEVDDDSN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0233 352 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 69 268 IPR000878 GO:0008168
Gso6g0233 352 CDD RsmI 70 286 IPR008189 GO:0008168
Gso6g0233 352 Gene3D - 54 175 IPR014777 GO:0008168
Gso6g0233 352 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 69 338 IPR008189 GO:0008168
Gso6g0233 352 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 349 - -
Gso6g0233 352 Gene3D - 176 293 IPR014776 GO:0008168
Gso6g0233 352 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 68 287 IPR008189 GO:0008168
Gso6g0233 352 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 146 157 IPR018063 GO:0008168
Gso6g0233 352 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 349 IPR008189 GO:0008168
Gso6g0233 352 SUPERFAMILY Tetrapyrrole methylase 67 285 IPR035996 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0233 Gso-Chr6 2258958 2266995 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0233 K07056 - gmx:100819709 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0254 4 2340603 2346254 Gso6g0233 6 2258958 2266995 GST