Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0254 ATGAGTTATCACAAGTTCAATGAATCGCAAAGGGAACAGGTTGTGCTGAGGAGGTTGAAGCAGGGTGAGATTGTGGCTCTCATAAGTGATGCTGGAATGCCAGGCATCAGTGATCCCGGTATGGAGTTGGCCAAACTGTGTGTGAGTGAGAATATCCTGGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTATCAGCTCTTTCTGCCTCGGGTTTAACTACTGATGAATTTACATTTGTTGGTTTTCTTCCTAAACATTCGGAATTGAGAAGAAAAAGGCTCATGGTTTCAGCTGATCAAACTACAACTCAAATATTTTATGTTGCTCCTCACAAGCTTTCTCAGTTCCTTGATGAGAGTTCTTCAATTTTTGGTGATGCAAGGCAATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAAGAGCGGGATGACACCTTGGAGGAAAATGCTAGTAGAGTAAAAGCCATTAAATGCATTAAGCCTGCTTATGCAGTACCATTACACGTAGTTGGTCGAATGGATCTTGCCGGTGCTGTCTTTTGGTTAGTATAA 555 0.4252 MSYHKFNESQREQVVLRRLKQGEIVALISDAGMPGISDPGMELAKLCVSENILVVPIPGPCALVSALSASGLTTDEFTFVGFLPKHSELRRKRLMVSADQTTTQIFYVAPHKLSQFLDESSSIFGDARQCVIAREMTKLHEERDDTLEENASRVKAIKCIKPAYAVPLHVVGRMDLAGAVFWLV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0254 184 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 1 150 IPR008189 GO:0008168
Gso4g0254 184 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 29 40 IPR018063 GO:0008168
Gso4g0254 184 Gene3D - 60 162 IPR014776 GO:0008168
Gso4g0254 184 Gene3D - 1 59 IPR014777 GO:0008168
Gso4g0254 184 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 10 142 IPR000878 GO:0008168
Gso4g0254 184 CDD RsmI 1 158 IPR008189 GO:0008168
Gso4g0254 184 SUPERFAMILY Tetrapyrrole methylase 2 143 IPR035996 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0254 Gso-Chr4 2340603 2346254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0254 K07056 - gmx:100791110 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0254 4 2340603 2346254 Gso4g0254 4 2340603 2346254 ECH
Gso4g0254 4 2340603 2346254 Gso6g0233 6 2258958 2266995 GST