Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0232 ATGGCTGTCAACAACAACAAGCTTGTTCTGTTAACATTCACCATATGCCGTTTAATAGTAACGGTGGTCCCAGAGCTGCTCGATTTGGGACTCCAGGGTCGTCTCAGCGTTGACACGTGGGAACTGGAGGCGGCTTCAGTGGATTTCGGGAGGCTGAGTAGAGGGGAGCCTTCGGAGGTGGTGCACCCTGCCACGGCAGAGGACGTGGCTAGGGTGGTGAATGCAGCGTTCGAGTCCCCGTTCGCCGTGTCGGCCAGGGGGCACGGACATTCGATAAACGGGCAAGCCCTTATAAAAGAGAAGAAAGGGGTGGTGATTGAAATGGGAAAAAGTGATAGTGGTGACAACAACGATCACAATGGTGATAGTAATATTATCAGAGTGTGTGAGAAAGGAATGTATGTGGATGTGTGGGGTGGGAAGTTGTGGATAGATGTTTTGAGTGCAACATTGGAGTATGGGCTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTATCCAACGCTGGAATTAGTGGACAAACCTTCAATCACGGTCCTCAGATCACCAATGTTTATGAGCTCGATGTCGTTACAGGAAAGGGTGAGCTGGTGACATGTTCAGAAGATCGTAACTCGGAGTTATTCCATTCTGTTCTTGGTGGTCTTGGACAATTTGGAATCATCACAAGGGCTAGAATTGCTCTCGAACCAGCTCCTCACAGAGTATGTGTTCGGTGGATACGAGTACTGTATTCAAATTTTGCAAGGTTTTGTAAGGACCAGGAGTATCTGATATCTCTGCATGGGAAAGCAGCAAGGGAGAGATTCGACTATGTGGAGGGTTTCGTGATAGTTGATGAAGGGCTGATCAACAATTGGAGGTCTTCGTTCTTTGCAGCTAGTAACCCTGTTAAAATCACTTCCCTCAACGCTGACGGAGGTGTTTTGTACTGCTTGGAGATTACCAAAAACTACGACCAAGGGAACGCAGATTCTGTTGATGAGGAAATACAAGCTCTATTGAAAAAGTTAAATTTTATACCAACATCGGTTTTCACAACGGACTTGCCTTACGTGGATTTTCTGGATCGTGTACATAAGGCAGAGCTGAAGCTTAAATCCAAGGGTTTATGGGATGTACCTCATCCATGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGAGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTTGGAAATAAGACAAGTGGGCCTATCCTCATATACCCTATGAACAAAAACAAGTGGGACCATCGAAGCTCAGTGGTGACACCAGAAGAGGATGTGTTTTACCTGGTGGCATTTCTAAGATCAGCATTGGATACTGAGACATTGGAGTACCTAACTAATCAGAACCGTCAGATTCTGAGATTCTGCCATGATTCAGAGATCAAGGTGAAACAGTACCTACCCCATTACACTACGCAGCAGGAGTGGATGGACCACTTTGGTGATAAGTGGACCCAATTCAATGCCAGGAAGATGCAATTCGATCCCCGCCGAATCTTAGGCACAGGGCAACAAATTTTTCAATTTCATCCCTCCCTCACTCCCAACAAGGATGATATGTAA 1596 0.4637 MAVNNNKLVLLTFTICRLIVTVVPELLDLGLQGRLSVDTWELEAASVDFGRLSRGEPSEVVHPATAEDVARVVNAAFESPFAVSARGHGHSINGQALIKEKKGVVIEMGKSDSGDNNDHNGDSNIIRVCEKGMYVDVWGGKLWIDVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQITNVYELDVVTGKGELVTCSEDRNSELFHSVLGGLGQFGIITRARIALEPAPHRVCVRWIRVLYSNFARFCKDQEYLISLHGKAARERFDYVEGFVIVDEGLINNWRSSFFAASNPVKITSLNADGGVLYCLEITKNYDQGNADSVDEEIQALLKKLNFIPTSVFTTDLPYVDFLDRVHKAELKLKSKGLWDVPHPWLNLFVPKSRIEDFDKGVFKGILGNKTSGPILIYPMNKNKWDHRSSVVTPEEDVFYLVAFLRSALDTETLEYLTNQNRQILRFCHDSEIKVKQYLPHYTTQQEWMDHFGDKWTQFNARKMQFDPRRILGTGQQIFQFHPSLTPNKDDM* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0232 531 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 244 518 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso6g0232 531 Pfam FAD binding domain 57 207 IPR006094 GO:0050660
Gso6g0232 531 PANTHER CYTOKININ OXIDASE 5-RELATED 9 519 - -
Gso6g0232 531 ProSiteProfiles PCMH-type FAD-binding domain profile. 53 238 IPR016166 GO:0071949
Gso6g0232 531 PANTHER GULONOLACTONE OXIDASE 9 519 - -
Gso6g0232 531 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 57 90 IPR006093 GO:0016491
Gso6g0232 531 Gene3D - 241 477 IPR016170 -
Gso6g0232 531 Gene3D - 38 518 IPR016167 -
Gso6g0232 531 Gene3D - 108 240 IPR016169 -
Gso6g0232 531 SUPERFAMILY FAD-linked oxidases, C-terminal domain 244 518 IPR016164 GO:0003824|GO:0050660
Gso6g0232 531 SUPERFAMILY FAD-binding/transporter-associated domain-like 32 237 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0232 Gso-Chr6 2253864 2261294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0232 K00279 - gmx:100790584 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0253 4 2334415 2342258 Gso6g0232 6 2253864 2261294 GST