Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0253 ATGGCTGTCAACAACAACAAGCTTGTTCTGTTAACATTCGCCATATGCCGTTTAATAGTAACTGTGGGATTAACGGTGGTCCCGGAGCTGCTCGATGTGGGACTCCAGGGTCGTCTCAGCGTGGACACGTGGGAACTGGAGGCGGCTTCGGTGGATTTCGGGAGGCTGAGTCGAGGGGAGCCTTCGGAGGTAGTGCACCCTGCCACGGCGGAGGATGTGGCTAGGGTGGTGAAGGCGGCGTTCGAGTCTCCGTTCGCCGTGTCAGCGAGGGGGCACGGGCATTCGATAAACGGGCAAGCCATGATAAAAGAGAAGAAAGGAGTGGTGATTGAAATGGGAAAAAGTGATAGTGGTGAGGATGGTAGTAGTATTAGAGTGAGTGAGAAAGGAATGTATGTGGACGTGTGGGGTGGGAAGTTGTGGATAGATGTTTTGAGTGCAACATTGGAGTATGGGCTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTATCCAACGCTGGAATTAGTGGACAAACCTTCAATCACGGTCCTCAGATCACCAATGTTTATGAGCTCGATGTCGTTACAGGAAAGGGTGAGCTGGTGACATGTTCAGAAGATCGTAACTCGGAGTTGTTCCATGCTGTTCTAGGTGGTCTTGGACAATTTGGAATCATCACAAGGGCTAGAATTGCTCTCGAACCAGCTCCTCACAGAGTTCGGTGGATACGAGTACTGTATTCGAATTTTGCAAGGTTTTGTAAGGACCAGGAGTATCTGATATCTCTGCATGGGAAAGCAGCAAGGGAGAGATTCGACTATGTGGAGGGTTTCGTGATAGTTGATGAAGGGCTGATCAATAATTGGAGGTCTTCGTTCTTTTCAGCTAGTAACCCAGTTAAAATCACTTCCCTCAACGCTGACGGAGGTGTTTTGTACTGCTTGGAGATTACCAAAAATTACGACCAAGGAAACGCAGATTCTGTTGATGAGGAAATACAAGCTCTATTGAAAAAGTTAAATTTTATACCAACATCGGTTTTCACAACGGACTTGCCTTACGTGGATTTTCTGGATCGTGTACATAAGGCAGAGCTGAAGCTTAGATCCAAGGGTTTATGGGATGTACCTCATCCGTGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGGGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTTGGAAATAAGACAAGTGGACCTATCCTCATATACCCTATGAACAAAAACAAGTGGGACCAGCGAAGCTCGGTGGTGACACCAGAAGAGGATGTGTTTTACCTGGTGGCATTTCTAAGATCGGCATTGGATACTGAGACGCTGGAGTACCTGACTAATCAGAACCGTCAAATTCTGAAATTCTGCCATGATATAGAGATCAAGGTAAAACAATACCTGCCCCATTACACTACGCAGCAGGAGTGGATGGACCACTTTGGTGATAAGTGGCCCCAGTTCAATGCTAGGAAGATGCAATTCGATCCCCGCCGAATCTTAGCCACAGGCCAGCAAATTTTTCAGTTTCATCCCTCACTCACCCTCAATATGTAG 1575 0.4737 MAVNNNKLVLLTFAICRLIVTVGLTVVPELLDVGLQGRLSVDTWELEAASVDFGRLSRGEPSEVVHPATAEDVARVVKAAFESPFAVSARGHGHSINGQAMIKEKKGVVIEMGKSDSGEDGSSIRVSEKGMYVDVWGGKLWIDVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQITNVYELDVVTGKGELVTCSEDRNSELFHAVLGGLGQFGIITRARIALEPAPHRVRWIRVLYSNFARFCKDQEYLISLHGKAARERFDYVEGFVIVDEGLINNWRSSFFSASNPVKITSLNADGGVLYCLEITKNYDQGNADSVDEEIQALLKKLNFIPTSVFTTDLPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIGDFDKGVFKGILGNKTSGPILIYPMNKNKWDQRSSVVTPEEDVFYLVAFLRSALDTETLEYLTNQNRQILKFCHDIEIKVKQYLPHYTTQQEWMDHFGDKWPQFNARKMQFDPRRILATGQQIFQFHPSLTLNM* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0253 524 PANTHER CYTOKININ OXIDASE 5-RELATED 9 515 - -
Gso4g0253 524 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 237 514 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso4g0253 524 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 61 94 IPR006093 GO:0016491
Gso4g0253 524 ProSiteProfiles PCMH-type FAD-binding domain profile. 57 236 IPR016166 GO:0071949
Gso4g0253 524 SUPERFAMILY FAD-linked oxidases, C-terminal domain 237 514 IPR016164 GO:0003824|GO:0050660
Gso4g0253 524 Gene3D - 112 238 IPR016169 -
Gso4g0253 524 Gene3D - 239 473 IPR016170 -
Gso4g0253 524 Gene3D - 42 514 IPR016167 -
Gso4g0253 524 SUPERFAMILY FAD-binding/transporter-associated domain-like 36 235 IPR036318 GO:0050660
Gso4g0253 524 Pfam FAD binding domain 61 205 IPR006094 GO:0050660
Gso4g0253 524 PANTHER GULONOLACTONE OXIDASE 9 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0253 Gso-Chr4 2334415 2342258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0253 K00279 - gmx:100790584 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0253 4 2334415 2342258 Gso4g0253 4 2334415 2342258 ECH
Gso4g0253 4 2334415 2342258 Gso6g0232 6 2253864 2261294 GST