Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0188 ATGGATCACTTAACACTAGCATTTCCATTTTTACTAACACTTCATCTATTAGCATCGGGTGTATTAGCAACAACAACGTTCACACTGGTTAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCGACGCTTCCAACAACCGGTTTCGTTCTTCAAACCGCTGAGTCCAAAACCGTAACCGCTCCAACCTCTTGGGGCGGCCGTTTCTGGGGCCGCACTCTCTGCACCCAAGACTCCGCCGGAAAATTCTCCTGCATTACCGGCGATTGCGGCTCCGGCAAGCTCGAATGCGCCGGCAGCGGCGCCACGCCGCCGGCGACCTTGGCCGAGTTCACCCTCGACGGCGCCGGAGGCCTGGATTTCTTCGACGTGAGCCTCGTGGACGGTTACAACGTGGCGATGCTGGTGGCTCCCCAGGGTGGCTCCGGCGATAACTGCACGAGCACGGGGTGTGCTGGGGACCTGAACGGCGCGTGTCCTTCGGAGCTTAGGGTTACGAGCGAGGATGGGAAACAGAGCGTGGCGTGTAAGAGCGCGTGTGAGGCGTTCGGGTCACCGCAGTATTGCTGCAGCGGCGCGTATGGGTCACCCAACACTTGCAAGCCTTCGCCTTACTCGCAGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAAGACCAGCACGTTTACGTGCGCTTCTGCTGCGGCTTACACCATCACTTTTTGTCCTTCTCCTAACAGTAATCCCAGTTGGATATTTATGGGTCAAGCTGTCGTATCGAAATATTCTCCATAA 810 0.5617 MDHLTLAFPFLLTLHLLASGVLATTTFTLVNKCDYTVWPGILSNAGIATLPTTGFVLQTAESKTVTAPTSWGGRFWGRTLCTQDSAGKFSCITGDCGSGKLECAGSGATPPATLAEFTLDGAGGLDFFDVSLVDGYNVAMLVAPQGGSGDNCTSTGCAGDLNGACPSELRVTSEDGKQSVACKSACEAFGSPQYCCSGAYGSPNTCKPSPYSQIFKNACPRAYSYAYDDKTSTFTCASAAAYTITFCPSPNSNPSWIFMGQAVVSKYSP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0188 269 Pfam Thaumatin family 31 248 IPR001938 -
Gso6g0188 269 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Gso6g0188 269 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gso6g0188 269 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gso6g0188 269 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Gso6g0188 269 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Gso6g0188 269 Gene3D Thaumatin 25 248 IPR037176 -
Gso6g0188 269 PANTHER BNAA02G17480D PROTEIN 4 258 - -
Gso6g0188 269 CDD TLP-PA 26 247 - -
Gso6g0188 269 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Gso6g0188 269 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Gso6g0188 269 PANTHER OS03G0233200 PROTEIN 4 258 IPR001938 -
Gso6g0188 269 SMART tha2 27 248 IPR001938 -
Gso6g0188 269 PIRSF PR5 1 267 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0188 Gso-Chr6 1788837 1793229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0188 1 249 Receptor kinase-like Gene Family AT5G38280 52.191 5.29e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0188 - - gmx:100795186 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0208 4 1883215 1886573 Gso6g0188 6 1788837 1793229 GST