Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0208 ATGGATCAGTTAACACTAGCATTTCCATTTTTACTAACACTTCATCTGTTAGTATCAGGTGTAGTAGCAACAACATCGTTCACACTGGTTAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCCACGCTTCCAACAACAGGTTTCGTTCTTCAAACCGGAGAGTCCAAAACCGTAACCGCTCCAACCTCTTGGGGTGGCCGTTTCTGGGGCCGCACACTCTGCACGCAAGACTCCGCCGGAAAATTCTCTTGCCTCAGCGGCGATTGCGGCTCCGGCAAGCTCGAATGCGCCGGAAACGCCGCCACGCCGCCTGCTACCTTAGCCGAGTTCACTCTCGACGGCGCCGGAGGCCTCGATTTCTTCGACGTGAGCCTCGTGGACGGTTACAACGTGCCGATGCTGGTGGCTCCCCAGGGTGGCTCCGGCGATAACTGCACGAGCACTGGGTGCGTTGGGGACCTGAACGGCGCGTGTCCTTCGGAGCTTAGGGTTACGAGCGTGGATGGGAAACAGAGCGTGGCGTGTAAGAGCGCGTGCGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAGCGGCGCGTATGGGTCGCCCACCACTTGCAAGCCTTCGCCTTACTCGCAGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAAGACCAGCACGTTTACGTGCGCTTCTGCTGCGGCTTACACCATCACTTTTTGTCCTTCTCCTAGCAGTAACCCCAGTCAGAAATCGTGGCAAGGGCAAAACCCTAAATCAGATAGTAGTGGCTCGGCTTCGGCTTCTGCTTCTGGGTCGCCGCAACTTAACAACGGCACAATGGTATATGTAGGTAGCATGGATGAAAGTGAATTATGGTCCGCAGGTAGTACCCATGGGCCGGAATCTCAAACCATTGCGGGCTTTGTTAGTATCACCATCGCTGTTTGGCTCTTGTGCCACCTCTACTAA 990 0.5535 MDQLTLAFPFLLTLHLLVSGVVATTSFTLVNKCDYTVWPGILSNAGIATLPTTGFVLQTGESKTVTAPTSWGGRFWGRTLCTQDSAGKFSCLSGDCGSGKLECAGNAATPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVAPQGGSGDNCTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCSGAYGSPTTCKPSPYSQIFKNACPRAYSYAYDDKTSTFTCASAAAYTITFCPSPSSNPSQKSWQGQNPKSDSSGSASASASGSPQLNNGTMVYVGSMDESELWSAGSTHGPESQTIAGFVSITIAVWLLCHLY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0208 329 SMART tha2 27 248 IPR001938 -
Gso4g0208 329 PANTHER OS03G0233200 PROTEIN 4 275 IPR001938 -
Gso4g0208 329 CDD TLP-PA 26 247 - -
Gso4g0208 329 PANTHER BNAA02G17480D PROTEIN 4 275 - -
Gso4g0208 329 Pfam Thaumatin family 31 248 IPR001938 -
Gso4g0208 329 Gene3D Thaumatin 25 248 IPR037176 -
Gso4g0208 329 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Gso4g0208 329 SUPERFAMILY Osmotin, thaumatin-like protein 26 249 IPR037176 -
Gso4g0208 329 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gso4g0208 329 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gso4g0208 329 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Gso4g0208 329 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Gso4g0208 329 MobiDBLite consensus disorder prediction 253 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0208 Gso-Chr4 1883215 1886573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0208 1 266 Receptor kinase-like Gene Family AT5G38280 51.292 3.57e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0208 - - gmx:100780102 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0208 4 1883215 1886573 Gso4g0208 4 1883215 1886573 ECH
Gso4g0208 4 1883215 1886573 Gso6g0188 6 1788837 1793229 GST