Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0182 ATGCAGCAAGGAGACTACACCTCCGCTCCATCTCCATATTATCAATTCCCTCATCTCCAAAACCCCAATCCCAATCCCAATCCCAATCCCGATCCACACCCAAACAACCCTTACGCTTCTGCACCTCCCTTCACCCCCAATTACGCTCCCTCCGATTACACCCCTTACCCTTCCTACCCTCAAAATCCCGATCCTTCTCCACCCACTGCTCCTTCCTTTCCTCCCTCTTCTTCCAACCCTAATTTACCCCCTCCTTTCAATCCTCCCTTCGAATCTAACCCTCCCTACCAACAACAACAACCCTATTTCTCACCATATGATCAGCATCAAACGCCTCCCAACCCCAATTCCACTCCCTCCTCATACAACCCTGTCCCTTCTCCCTACAGCTACTCCGGACCCTCCTCCGTTCCTCCGATTCCGACCTACGAACCTGCATACGAGGCTCCCGTGAGGCCCGATCAAGGTGGAGGCTACTTTGACGACAGGTACCGAGCCGGATTTACTCGGAGCCATTCCGATTTGGGATCCGATTTTTACGGGAAGAGCGGTGGTGGCGCAGATGATGGATACGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTACGGGGCGCGTGGCACGGCGCCAAAATCGTCGACTTGGGCGGCGTTTGATGATTACGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTTCTGTGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGCTGATACACAACAAGATGTCAAAGGTGGCGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCCGAAAGTGGGGGTCAGAGCACTATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAATACCAGCCGGACATTGAGAATTTATCCTCTTGAGAACATAACAAGATGTGATAGAATCGATTCATCTACCTTTGCATTTTGGTCAAAGAGTCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAGGCAGGAGGCCTGCTGAAGCTGTGAAAACAAATGAACTGTCTTCAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTTATCAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCGGATGAAGCCGTCTCAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACCCATGGTAGAATTGCTCTGACTGCTGATGAGAATGCTCAGCCTGTACGAGTTTGTGACCGTTGCATGGCTGAAGTGACTCAGCGGCTGACTAGTGCGAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCAAAGAAACTTCAGGAGGAACTAGAGAGAAATCAAAAGGCATCAGGTTCCAAGTCTGATGGATCTGCAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCGGGTTCAGAGACTATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1647 0.4918 MQQGDYTSAPSPYYQFPHLQNPNPNPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSYPQNPDPSPPTAPSFPPSSSNPNLPPPFNPPFESNPPYQQQQPYFSPYDQHQTPPNPNSTPSSYNPVPSPYSYSGPSSVPPIPTYEPAYEAPVRPDQGGGYFDDRYRAGFTRSHSDLGSDFYGKSGGGADDGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSSVGGKIVKAVPKADTQQDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRIDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDIVTAATIQFKEMGGGRRPAEAVKTNELSSERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLTSAKESSSKPALQSHEDLAKKLQEELERNQKASGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0182 548 SUPERFAMILY PH domain-like 266 326 - -
Gso6g0182 548 MobiDBLite consensus disorder prediction 1 16 - -
Gso6g0182 548 PANTHER PROTEIN FREE1 1 548 - -
Gso6g0182 548 MobiDBLite consensus disorder prediction 56 95 - -
Gso6g0182 548 PANTHER PROTEIN FREE1 1 548 IPR045893 GO:0036258|GO:0043130
Gso6g0182 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 468 IPR013083 -
Gso6g0182 548 Coils Coil 478 498 - -
Gso6g0182 548 PRINTS Proline rich extensin signature 1 12 - -
Gso6g0182 548 PRINTS Proline rich extensin signature 21 42 - -
Gso6g0182 548 PRINTS Proline rich extensin signature 44 60 - -
Gso6g0182 548 PRINTS Proline rich extensin signature 67 84 - -
Gso6g0182 548 PRINTS Proline rich extensin signature 108 133 - -
Gso6g0182 548 SMART fyve_4 395 464 IPR000306 GO:0046872
Gso6g0182 548 MobiDBLite consensus disorder prediction 1 155 - -
Gso6g0182 548 Pfam FYVE zinc finger 399 463 IPR000306 GO:0046872
Gso6g0182 548 MobiDBLite consensus disorder prediction 96 116 - -
Gso6g0182 548 SUPERFAMILY FYVE/PHD zinc finger 398 470 IPR011011 -
Gso6g0182 548 MobiDBLite consensus disorder prediction 131 146 - -
Gso6g0182 548 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 403 463 IPR017455 -
Gso6g0182 548 MobiDBLite consensus disorder prediction 17 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0182 Gso-Chr6 1720267 1728944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0182 381 464 EF-hand Containing Proteins AT3G14270 34.694 3.28e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0182 - - gmx:100794840 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0202 4 1823824 1829542 Gso6g0182 6 1720267 1728944 GST