Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0202 ATGCAGCAAGGAGACTACACCTCCGCTCCATCTCCATATTATCAATTCCCTCATCTCCAAAACCCCAATCCCAATCCCGATCCACACCCAAACAACCCCTACGCTTCTGCACCTCCCTTCACCCCCAATTACGCTCCTTCCGATTACACCCCTTACCCTTCTTCCTACCCTCAAAATCCCGATCCTATTCCACCCACTGCTCCTTCCTTCCCTCCCTCTTCCTCCAACCCTAATTTACCCCCTCCTTTCAATCCTCCCTTCGATTCTAACCCTCCCTACCAACAACCGCAACCACAACAACCCTATTTCCCACCCTATGATCACCATCAAACGCCTCCCAATTACGCCCCTCCCAACACCAATTCCACTCCCTCAGTATACAACTCTGCTCCCTACAGCTACACTGGAGTCTCCTCCGTTCCTCCGATTCCGACGTACGAACCTGCATACGACGCTCCGGTGAGGCCCGATCATGGTGGAGGCTATTTTGACGACAGATACTGCTCTGGATTTACTCGGAGCCATTCCGATTTGGGATCGGATTTTTACGGGAAGAGCGTTGGTGGTGCTTCGAGATATGACGGTGTCGCTGATGATGGATACGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTATGGGGCGCGTGGCACGGCGCCAAAATCGTCGACTTGGGCGGCGTTTGATGATTACGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTGTGGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGCTGATACACAAGAAGACGTCAAAGGTGGTGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCAGAAAGTGGGGGTCAGAGCACCATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGCATGCTGGATCCAAATACCAGCCGGACATTGAGAATTTATCCTCTTGAGAACATAACAAGATGTGATAGAATCGATTCATCTACCTTTGCATTTTGGTCAAAGAGCCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAGGTGGCCTGCTGAAGCAGTGAAACCAAATGAACAGCCTACAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTTATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCAGATGAAGCCGTCTCAAAATGTACAGCATGTGGTACTGATTTTGGGGCTTTTGTTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACATATGGTAGAATTGCTCTGACTGCTGATGAGAATGCTCAGCCTGTACGAGTTTGTGACCGGTGCATGGCGGAAGTGTCTCAGCGGCTGACTAGTGCAAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCAAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGACATCAGGTTCCAAGTCTGATGGATCTGCAAGACGGATGAAGGAAGTTGCATGTCCCATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCGGGTTCAGAGACAATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGCGCTCATTGA 1674 0.491 MQQGDYTSAPSPYYQFPHLQNPNPNPDPHPNNPYASAPPFTPNYAPSDYTPYPSSYPQNPDPIPPTAPSFPPSSSNPNLPPPFNPPFDSNPPYQQPQPQQPYFPPYDHHQTPPNYAPPNTNSTPSVYNSAPYSYTGVSSVPPIPTYEPAYDAPVRPDHGGGYFDDRYCSGFTRSHSDLGSDFYGKSVGGASRYDGVADDGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSVGGKIVKAVPKADTQEDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRIDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDIVTAATIQFKEMGGSRWPAEAVKPNEQPTERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRRHHCRNCGDIFCDKCTYGRIALTADENAQPVRVCDRCMAEVSQRLTSAKESSSKPALQSHEDLARKLQEELERNRKTSGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0202 557 MobiDBLite consensus disorder prediction 113 127 - -
Gso4g0202 557 MobiDBLite consensus disorder prediction 17 46 - -
Gso4g0202 557 SMART fyve_4 404 473 IPR000306 GO:0046872
Gso4g0202 557 MobiDBLite consensus disorder prediction 1 16 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 16 28 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 30 46 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 51 63 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 64 85 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 85 101 - -
Gso4g0202 557 PRINTS Proline rich extensin signature 109 126 - -
Gso4g0202 557 Pfam FYVE zinc finger 408 472 IPR000306 GO:0046872
Gso4g0202 557 MobiDBLite consensus disorder prediction 53 112 - -
Gso4g0202 557 SUPERFAMILY FYVE/PHD zinc finger 407 478 IPR011011 -
Gso4g0202 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 477 IPR013083 -
Gso4g0202 557 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 412 472 IPR017455 -
Gso4g0202 557 PANTHER PROTEIN FREE1 1 557 IPR045893 GO:0036258|GO:0043130
Gso4g0202 557 SUPERFAMILY PH domain-like 274 335 - -
Gso4g0202 557 MobiDBLite consensus disorder prediction 1 127 - -
Gso4g0202 557 PANTHER PROTEIN FREE1 1 557 - -
Gso4g0202 557 Coils Coil 487 507 - -
Gso4g0202 557 CDD PTB 274 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0202 Gso-Chr4 1823824 1829542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0202 390 473 EF-hand Containing Proteins AT3G14270 34.694 4.96e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0202 - - gmx:100794840 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0202 4 1823824 1829542 Gso4g0202 4 1823824 1829542 ECH
Gso4g0202 4 1823824 1829542 Gso6g0182 6 1720267 1728944 GST