Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0117 ATGGCTTTCTCCACCTCAAAGGCACTACTTGTCCTTGCCTGCTCCTTCTGCCTATTTGCATCTTTTACTTTTGGACGCGATTTCTCCATTGTGGGCTATTCATCGGAGGACTTAAAGTCCATGGATAAGCTCATTGAACTCTTTGAATCATGGATATCAAGACATGGCAAGATTTACCAAAGCATTGAGGAGAAGCTGCATAGGTTCGAGATTTTCAAGGACAACCTAAAGCACATAGATGAGAGAAACAAGGTGGTCAGCAACTACTGGCTTGGCTTGAATGAGTTTGCTGATTTGAGCCACCAAGAGTTCAAGAACAAATATCTGGGGCTTAAGGTGGACTACTCTAGAAGGAGAGAGTCCCCTGAAGAATTCACTTACAAAGATGTTGAATTGCCAAAGTCAGTGGATTGGAGAAAGAAAGGTGCTGTAACCCAAGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCTACTGTTGCAGCAGTTGAGGGAATAAACCAGATTGTGACCGGAAATTTAACATCATTGTCTGAGCAAGAATTGATTGACTGTGACAGAACTTACAACAATGGTTGCAATGGGGGTCTCATGGACTATGCATTCTCCTTTATAGTAGAAAACGATGGACTCCATAAAGAGGAAGACTATCCTTACATTATGGAGGAAGGCACCTGCGAGATGGCAAAGGAAGAAACTGAAGTTGTGACTATTAGCGGGTACCATGACGTACCACAAAACAATGAACAGAGCCTATTGAAAGCACTTGCAAACCAACCCCTCAGTGTGGCCATAGAGGCTTCAGGCAGGGATTTCCAATTTTACAGTGGGGGTGTTTTCGATGGGCATTGCGGAAGTGACTTGGATCACGGTGTGGCAGCTGTTGGATACGGAACTGCAAAAGGGGTGGATTATATCACAGTGAAAAATTCATGGGGATCCAAGTGGGGAGAGAAAGGATACATAAGAATGAGGAGAAACATTGGAAAGCCCGAGGGAATCTGCGGAATCTATAAGATGGCCTCTTATCCCACTAAGAAGAAATAA 1053 0.4397 MAFSTSKALLVLACSFCLFASFTFGRDFSIVGYSSEDLKSMDKLIELFESWISRHGKIYQSIEEKLHRFEIFKDNLKHIDERNKVVSNYWLGLNEFADLSHQEFKNKYLGLKVDYSRRRESPEEFTYKDVELPKSVDWRKKGAVTQVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRTYNNGCNGGLMDYAFSFIVENDGLHKEEDYPYIMEEGTCEMAKEETEVVTISGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSDLDHGVAAVGYGTAKGVDYITVKNSWGSKWGEKGYIRMRRNIGKPEGICGIYKMASYPTKKK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0117 350 Gene3D Cysteine proteinases 27 349 - -
Gso6g0117 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
Gso6g0117 350 SMART Inhibitor_I29_2 48 104 IPR013201 -
Gso6g0117 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Gso6g0117 350 CDD Peptidase_C1A 133 346 IPR039417 -
Gso6g0117 350 Pfam Papain family cysteine protease 132 347 IPR000668 GO:0006508|GO:0008234
Gso6g0117 350 SUPERFAMILY Cysteine proteinases 43 347 IPR038765 -
Gso6g0117 350 SMART pept_c1 132 347 IPR000668 GO:0006508|GO:0008234
Gso6g0117 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 307 326 IPR025661 -
Gso6g0117 350 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Gso6g0117 350 PANTHER - 25 348 - -
Gso6g0117 350 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Gso6g0117 350 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508|GO:0008234
Gso6g0117 350 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0117 Gso-Chr6 1112589 1114280 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0117 K16290 - gmx:100809366 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0129 4 1128968 1134657 Gso6g0117 6 1112589 1114280 GST