Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0113 ATGGCCACCACAGCCACCGAACCTCTCCCTTCCTCCGCTGAAATGCCTCCTGCCCCGCCTCCTCCGAAGCAAATGCCGCAACCGGTGGCGGCGGCGTCAGCAGTGAAGCCTGAGGCTCCATTGTCCGATTCGAAAGCTTCGGCGGAGGCGAACGTAATAGTGGTCCCGAGCTACTCTCGTTGGTTCTCGTGGGATTCGATTGACGAATGCGAGGTGCGTCACCTCCCCGAGTTCTTCGAATCGGCGTCGAAGAGCCCTAGGGTTTACAAGTACTACAGGAACTCGATCGTGAAGTACTTCAGGTACAATCCCACCCGAAAAATCACCTTCACCGATGTCCGCAAAACGCTCGTGGGAGACGTCGGTTCCATCCGAAGAGTCTTCGATTTCCTCGAAACTTGGGGGCTTATCAATTACCATCCCTCTTCGTCGCTCACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAATCCGATTCTGCCTCCAACACCACCGAATCTTCTTCCGCTCCCGCCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGTCGTTTGCACCATAGCTTGTTTTGCCTGTGACAAGTATGATTTGACTCTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACGGATTGGAACGAAAAGGAGACCACGAATCTTCTGGAAGCTATTACGCATTACAGTGATGATTGGAAGAGGGTTTCTCAGCATGTTCCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGTGGATCAATTCCAGCATTATCAACAACACCCTGCTGTCAATGGCACTGATGACAGTTGTAATCCGTTAAAGAGGGTAACTAATGCTGATGCAGAATCTGAATTGGATACTGTTGCCTCTGCTGAACCCAATAAGAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCGATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCTGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGTCGTTTCCGAGGAATACATTGCTGCAAGATGCTGGTATCATGTCTAACGGTGGTAATACTTCAGATTCATTTCAAGGATCTCGATTGCATGCAAACATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGATAAGCTTGTTCAGTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAGGCCAACAGCTGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCATAAATCATCTGCACCAAAAACTGGAGAATGCCAAGAAGGCAATAATGTAAAGACGAACCATGGCTATTGA 1476 0.4688 MATTATEPLPSSAEMPPAPPPPKQMPQPVAAASAVKPEAPLSDSKASAEANVIVVPSYSRWFSWDSIDECEVRHLPEFFESASKSPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHPSSSLTKPLKWDDKETKSDSASNTTESSSAPAKENTKRLCSGCKVVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWNEKETTNLLEAITHYSDDWKRVSQHVPGRTEKECVAHFLKLPFVDQFQHYQQHPAVNGTDDSCNPLKRVTNADAESELDTVASAEPNKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATKINYRSFPRNTLLQDAGIMSNGGNTSDSFQGSRLHANIQLEKEELDVEKAISEIIEVQMKNIQDKLVQFEDLDLLMEKEGQQLEQMKNMFFLDQLTLLFHKSSAPKTGECQEGNNVKTNHGY* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0113 491 MobiDBLite consensus disorder prediction 1 40 - -
Gso6g0113 491 Gene3D - 228 279 - -
Gso6g0113 491 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Gso6g0113 491 SUPERFAMILY Homeodomain-like 49 149 IPR009057 -
Gso6g0113 491 ProSiteProfiles SANT domain profile. 228 279 IPR017884 -
Gso6g0113 491 MobiDBLite consensus disorder prediction 12 27 - -
Gso6g0113 491 PANTHER SWI/SNF COMPLEX-RELATED 1 486 - -
Gso6g0113 491 Pfam SWIRM-associated region 1 405 468 IPR032451 -
Gso6g0113 491 Coils Coil 409 429 - -
Gso6g0113 491 Pfam Myb-like DNA-binding domain 231 274 IPR001005 -
Gso6g0113 491 Gene3D - 59 143 IPR036388 -
Gso6g0113 491 SMART sant 229 277 IPR001005 -
Gso6g0113 491 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 1 486 - -
Gso6g0113 491 ProSiteProfiles SWIRM domain profile. 53 148 IPR007526 GO:0005515
Gso6g0113 491 SUPERFAMILY Homeodomain-like 229 276 IPR009057 -
Gso6g0113 491 CDD SANT 233 274 IPR001005 -
Gso6g0113 491 Pfam SWIRM domain 56 139 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0113 Gso-Chr6 1092994 1101586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0113 191 271 EF-hand Containing Proteins AT3G07740 33.696 1.06e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0113 K11649 - gmx:100779777 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0126 4 1114607 1118381 Gso6g0113 6 1092994 1101586 GST