Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0126 ATGGCCACCGCCGCCACCGAACCTCTCCCTTCCACCACCGAAACGCCTCCGGCACCGCCTCCACCGAAGCAACCCCCGCCTCCCGCGCCGCAACCTCCGGCGGCGGCGGCGGCGGCAGTGAAGCCGGAGGCTCCATTGCCCGATTCGAAAACTTCGGCGGAGGCGAACGTAATCGTGGTGCCGAGCTACTCTCGGTGGTTCTCGTGGGATTCGATTGACGAATGCGAGGCGCGTCACCTCCCTGAGTTCTTCGAATCGGCGTCCAAGAGCCCTAGGGTTTACAAGTACTACAGGAACTCCATCGTGAAGTACTTCAGGTACAATCCCACCCGCAAAATCACCTTCACCGATGTCCGCAAAACCCTCGTCGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAACTTGGGGTCTCATCAATTACCACCCCTCTTCGTCGCTCACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAATCCGATTCTGCATCCAACTCCACCGAATCTTCTTCCGCTCCCGTCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGTCGTTTGTACCATTGCTTGTTTTGCCTGTGACAAGTATGATTTGACACTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACGGATTGGAGTGAAAAGGAGATCACGAATCTTCTGGAAGCTATTTCGCATTACGGTGATGATTGGAAGAGGGTTTCTCAGCATGTTCCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGCGAATCAATTCCAGCATTATCAACAACACCCTGCTGTCAATGGCACAGATGACGGTTGTAATCTGTTAAAGATGGTAACTAATGCTGATGCTGAATCTGAATTGGATACTGTTGCCTCTGCTGAACCCAGTAAGAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCCATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCTGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGGCGTTTCCAAGGAATACATTGCTGCAAGATGCTGGTATCACGTCTAACGGTGGTAATACTTCAGATTCATTTCAAGGATCTCGATTGCATGCAAACATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGATAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAGGCCAGCAGATGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCATAAATCATCTGCACCAAAAACTGGAGAATGA 1452 0.4821 MATAATEPLPSTTETPPAPPPPKQPPPPAPQPPAAAAAAVKPEAPLPDSKTSAEANVIVVPSYSRWFSWDSIDECEARHLPEFFESASKSPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHPSSSLTKPLKWDDKETKSDSASNSTESSSAPVKENTKRLCSGCKVVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKEITNLLEAISHYGDDWKRVSQHVPGRTEKECVAHFLKLPFANQFQHYQQHPAVNGTDDGCNLLKMVTNADAESELDTVASAEPSKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATKINYRAFPRNTLLQDAGITSNGGNTSDSFQGSRLHANIQLEKEELDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKEGQQMEQMKNMFFLDQLTLLFHKSSAPKTGE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0126 483 SUPERFAMILY Homeodomain-like 54 154 IPR009057 -
Gso4g0126 483 ProSiteProfiles SANT domain profile. 233 284 IPR017884 -
Gso4g0126 483 Pfam SWIRM-associated region 1 410 473 IPR032451 -
Gso4g0126 483 CDD SANT 238 279 IPR001005 -
Gso4g0126 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 284 IPR017930 -
Gso4g0126 483 Gene3D - 233 283 - -
Gso4g0126 483 Coils Coil 414 434 - -
Gso4g0126 483 SUPERFAMILY Homeodomain-like 234 284 IPR009057 -
Gso4g0126 483 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Gso4g0126 483 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 8 482 - -
Gso4g0126 483 MobiDBLite consensus disorder prediction 1 51 - -
Gso4g0126 483 Gene3D - 64 148 IPR036388 -
Gso4g0126 483 Pfam Myb-like DNA-binding domain 236 279 IPR001005 -
Gso4g0126 483 MobiDBLite consensus disorder prediction 12 35 - -
Gso4g0126 483 Pfam SWIRM domain 61 144 IPR007526 GO:0005515
Gso4g0126 483 SMART sant 234 282 IPR001005 -
Gso4g0126 483 ProSiteProfiles SWIRM domain profile. 58 153 IPR007526 GO:0005515
Gso4g0126 483 PANTHER SWI/SNF COMPLEX-RELATED 8 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0126 Gso-Chr4 1114607 1118381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0126 196 276 EF-hand Containing Proteins AT3G07740 33.696 1.06e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0126 K11649 - gmx:100783679 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0126 4 1114607 1118381 Gso4g0126 4 1114607 1118381 ECH
Gso4g0126 4 1114607 1118381 Gso6g0113 6 1092994 1101586 GST