Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0078 ATGGGCGCTGCTTGTTGTGTTGCTGCCAGAGACAAAACCATACAAAGTGGATCAACCAGTGACAATTTGCATCGGAATGTTCGATGTTCTCCAACATGGAGCTTTCGTTGGGATCATCGAGGGCGTGTAGCTGGTGAAGATACTTCTATAAATTGGTTTTCTGACGGTATTAGCAGGAATGATGGATCAGAGAATAAAAATGAATCAACATATATGTCAGAGGACGGAAGTCCACTGCAGAATGATCAACGGAAAAGATGCCAAAAACCATCAATTTCGCAAGTAACTGCTGCACATAGGAGAAATTCAACTTCAGACCAATCTTTTTCAAGGACTGTTTCTACAGATGTGAGCGTCGAACAGGTGAATAGGTTGGCAGAATCATCAATAGTATCTTGCCCATCTCCCACAAAACCATCACTGCCTTCAACTTCATTATCAGCATCTCCTTTATCATCTCCATGTCACATACCTCCATCGAGCTCGGCACCTTTAAGGTGGCCCTGCCATTCCCCAGGACACCACCTATCACGGCAAGCTTCCGATAGCCGTATCCCAGCAGTTAAGTCACCCAGCAGCTTCTCTTTGTCTGAAGAAAGGGCTGTGTTTTCTTCATGGAGCAATGAAGTGGGTATGCACTCCCATGGTGGATCTTCAGATGGTTGGTCTATTCCTGGCTTTTCTGAGCTGATGGGAACTCCCCACAGAGAAAGATGGTCATTTGATAGTGAGTCATTTGGTTTTAATCGAGAAAGATTAGCTAGACCCAGTAGTTGGTTTTCAGCTTCACAAGTTGATTTGCAATCATGTGGTATTTGCTCAAAGCTTTTAGCAGAGAAGTCTTCTTGGAGCACTCAAAAGATAATTGCAAGTAATGACCTTTCTGTAGTTGCTGTCCTCATCTGTGGACATGTCTATCATGCTGAATGTTTGGAGATTATGACACCTGATATCAATAAGTATGATCCAGCTTGCCCAGTTTGCACTTTTGGTGAGAAACAAACTATGAAGTTGTCTGAAAAAGCTCTGAAAGCTGAAATGGATTTGAAGGCTAGAACCAATAAATCAAAGAATCGGGTTGTGGACAGTGATATTGATGATGATTCTGTTGTGTTTCATCACTTTAAAGGGAGAGGGCTTAAAGGTAAAAGTCCTAGGATAGACTCCAGTTCCAATGGGAGAAGCTCCTATGGGAAACCTTTTCTGAGGCGACACTTTTCCTTTGGATCAAAGGGTTCCAGATCTACATTAGATAATCACCCTACAAGAAAGAAGGGTTTCTTTTGGGCAAAATCTAGCAAGGAATAA 1308 0.4258 MGAACCVAARDKTIQSGSTSDNLHRNVRCSPTWSFRWDHRGRVAGEDTSINWFSDGISRNDGSENKNESTYMSEDGSPLQNDQRKRCQKPSISQVTAAHRRNSTSDQSFSRTVSTDVSVEQVNRLAESSIVSCPSPTKPSLPSTSLSASPLSSPCHIPPSSSAPLRWPCHSPGHHLSRQASDSRIPAVKSPSSFSLSEERAVFSSWSNEVGMHSHGGSSDGWSIPGFSELMGTPHRERWSFDSESFGFNRERLARPSSWFSASQVDLQSCGICSKLLAEKSSWSTQKIIASNDLSVVAVLICGHVYHAECLEIMTPDINKYDPACPVCTFGEKQTMKLSEKALKAEMDLKARTNKSKNRVVDSDIDDDSVVFHHFKGRGLKGKSPRIDSSSNGRSSYGKPFLRRHFSFGSKGSRSTLDNHPTRKKGFFWAKSSKE* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0078 435 MobiDBLite consensus disorder prediction 53 114 - -
Gso6g0078 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Gso6g0078 435 SMART ring_2 270 328 IPR001841 -
Gso6g0078 435 MobiDBLite consensus disorder prediction 379 398 - -
Gso6g0078 435 ProSiteProfiles Zinc finger RING-type profile. 270 329 IPR001841 -
Gso6g0078 435 PANTHER EXPRESSED PROTEIN 1 429 - -
Gso6g0078 435 PANTHER BNAA09G43140D PROTEIN 1 429 - -
Gso6g0078 435 MobiDBLite consensus disorder prediction 169 190 - -
Gso6g0078 435 MobiDBLite consensus disorder prediction 128 157 - -
Gso6g0078 435 SUPERFAMILY RING/U-box 264 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0078 Gso-Chr6 780087 784794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0078 - - gmx:100795372 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0088 4 786201 790708 Gso6g0078 6 780087 784794 GST