Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0088 ATGGGTGCTGCTTGTTGTGTTGCTGCCAGAGACAAAACTATACAAAGTGGATCAACCAGTGACAATTTGCATCGGAATGCTCGATGTTCTCCAACATGGAGCTTTCGGTGGGATCATCGGGGGCGTGTAGCTGGTGAAGATACTTCTATAAATTGGTTTTCAGATGGTATTAGCAGGAATGATGGATCAGAGAATAAAAATGAATCAGCATATGTGTCAGAGGATGGAAGTCCACTGCAGAATTATCAACAGAAAAGATGCCAAAAACCACCAATTTCGGAAGTAACTGCTGCACACAGGAGAAATTCAACTTCAGACCAATCTTTTTCAAGGACTGTTTCTACGGATGTGAACATCGAACAGGTGAATGGGTTGGCAGAATCATCAATAGTATCTTGCCCATCTCCCACAAAACCATCACTGCCTTCAACTTCATTATCAGCATCTCCTTTATCATCTCAATGTCACATACCTCCATCAAGTTCGACCCCTTTGAGGTGGCCCTGCCATTCCCCAGGACACCAGCTATCACAGCAAGCTTATGATAGCCGTATCCCAGCAGTTAAGTCACCCAGCAGCTTCTCTTTGTCTGACGAAAGGCCTGTGTTTTCTTCATGGAGCAATGAAGTGGGTATGCACTCCCATGGTGGATCTTCAGATGGTTGGTCTATACCTGGCTTTTCTGAGCTGATGGGAACACCCCAGAGAGAAAGATGGTCATTTGATAGTGAGTCCTATGGTTTTAACCGAGAAAGATTAGCTAGACCCAGTAGTTGGTTTTCAGCTTCACAAGTTGATTTGCAATCATGTGGTATTTGCTCAAAGCTTTTAGCAGAGAAGTCTTCTTGGAGCATGCAAAAGATAATTGCAAGTAATGACCTTTCTGTAGTTGCTGTCCTTGTCTGTGGACACGTCTGTCATGCTGAATGTTTGGAGATTATGACACCTGATATCAATAAGTATGATCCAGCTTGCCCAGTTTGCACTTTTGGTGAGAAACAAACTATAAAGTTGTCTGAAAAAGCTCTGAAAGCTGAAATGGATTTGAAGGCTAGAAACAATAAATCAAAGAATCGGGTTGTGGACAGTGATATTGACGATGATTCTGTTGTGTTTGATCACTTTAAAGGGAGAGGGCTTAAAGGTAAAGGTCCTAGGATAGACTCCAGTTCCAGTGGGAGAAGCTCCTTTGGGAAACCTTTTCTGAGGCGACATTTTTCCTTTGGATCAAAGGGTTCCAGATCCGTGTTAGATAATCACCCTACAAGAAAGAAGGGTTTCTTTTGGGCAAAATCTAGCAAGGAATAA 1308 0.4281 MGAACCVAARDKTIQSGSTSDNLHRNARCSPTWSFRWDHRGRVAGEDTSINWFSDGISRNDGSENKNESAYVSEDGSPLQNYQQKRCQKPPISEVTAAHRRNSTSDQSFSRTVSTDVNIEQVNGLAESSIVSCPSPTKPSLPSTSLSASPLSSQCHIPPSSSTPLRWPCHSPGHQLSQQAYDSRIPAVKSPSSFSLSDERPVFSSWSNEVGMHSHGGSSDGWSIPGFSELMGTPQRERWSFDSESYGFNRERLARPSSWFSASQVDLQSCGICSKLLAEKSSWSMQKIIASNDLSVVAVLVCGHVCHAECLEIMTPDINKYDPACPVCTFGEKQTIKLSEKALKAEMDLKARNNKSKNRVVDSDIDDDSVVFDHFKGRGLKGKGPRIDSSSSGRSSFGKPFLRRHFSFGSKGSRSVLDNHPTRKKGFFWAKSSKE* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0088 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Gso4g0088 435 PANTHER EXPRESSED PROTEIN 1 429 - -
Gso4g0088 435 MobiDBLite consensus disorder prediction 380 401 - -
Gso4g0088 435 SUPERFAMILY RING/U-box 263 329 - -
Gso4g0088 435 CDD RING-H2 270 328 - -
Gso4g0088 435 MobiDBLite consensus disorder prediction 130 171 - -
Gso4g0088 435 ProSiteProfiles Zinc finger RING-type profile. 270 329 IPR001841 -
Gso4g0088 435 MobiDBLite consensus disorder prediction 55 83 - -
Gso4g0088 435 PANTHER BNAA09G43140D PROTEIN 1 429 - -
Gso4g0088 435 SMART ring_2 270 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0088 Gso-Chr4 786201 790708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0088 - - gmx:100778123 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0088 4 786201 790708 Gso4g0088 4 786201 790708 ECH
Gso4g0088 4 786201 790708 Gso6g0078 6 780087 784794 GST