Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso6g0060 | ATGCCTGCCCTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGGTCGCCCTTACTGGCGTACCTCCGGCCACGACAGACGACAGCAACAACAACCGTTGGTCGCCGTCCCTCTCCGCTGCGCTCTACAACGTCGACGGCTGGGGCGGCCCCTACTTTGCCGTCAACACCGCCGGGAACATCTCCGTGCGCCCACACGGTTCCGACACGCTGTCGCACCAGGAGATCGATTTGTTGAAGATTGTGAAGAAGGCCTCCGATCCCAAATCTCTTGGGGGTCTCAGCCTCCAGCTTCCTCTCATTGCCCGCTTTCCTGACGTTCTGAAGAACCGGTTGGAGTCCCTCCAGTCGGCGTTCGATTATGCAATCCAATCTGGAGGGTACGAGTCTCATTACCAAGGAGTTTACCCCGTGAAATGCAACCAGGACCGGTTCGTGGTGGAGGATATCGTGAAATTCGGTTCACCCTTCCGGTTCGGTCTGGAGGCCGGGTCTAAGCCGGAACTCCTTCTGGCCATGAGCTGTCTTTGCAAAGGCAACCCCGACGCGCTTTTGATTTGCAACGGCTTCAAGGACGCGGAGTACATTTCTCTTGCCCTGGTTGCCAACAAACTTGCCCTCAACACCGTGATTGTTGTGGAGCAGGAGGAGGAGGTTGATTTGATCGTTGAATTGAGCAAGAAGCTCTGTATTAAGCCCGTGATTGGGCTTCGTGCGAAGCTTCGGACGAAGCATTCCGGCCATTTCGGTGGGACTTCAGGAGAGAAGGGGAAGTTTGGGCTGACCACCGCTCAGATTCTTAGGGTTGTGAAGAACCTGGACCTCGCGGGCATGCTGGATTGCCTGCAACTGCTGCATTTTCATATTGGTTCTCAGATTCCCTCAACAGCGTTGCTTGCTGATGGTGTGGGAGAGGCTGCGCAGATCTACTGCGAGTTGGTTCGGCTCGGGGCGAACATGCGAGTCATCGATATTGGAGGTGGACTGGGCATAGATTACGACGGTTCCAAATCGTGTGACTCTGATATTTCCGTTGAGTACAGTCTCGAGGATTATGCAGTCGCGGTTGTTCACGCGGTTCAGTGTGTGTGCGACCGAAGGTCCGTGAAACACCCAGTTATCTGCAGCGAGAGTGGGAGAGCCATCGTGTCTCATCATTCGGTCTTGATTTTCGAGGCGGTTGGCACCAGCAGCACCACCGGGGGAGGAGCTTCCCCTGCATTGTCCGCTCAATATCTGGCGGAGGAGCTGTCGGAGGATTACCGCAATCTGTCGGAGCTGGCTTTTAGAGGGGAATATGAAACGTGTCTGGTGTACACGGAGGAGATGAAGGAGCGATGCGTGGAACAGTTCAAGCAGGGGACGGTGTGTATGGAACAGCTGGCAGCGGTGGAAGGATTGTGCGAGTTGGCGAGGAAGGCGGTTGGGGCGGGGGAATCGGTTCGGAGATATCACGTGAACCTGTCTGTTTTCACGTCCGTTCCAGACGCGTGGGGAATTGAACAGGTGTTTCCCATTATCCCAATTCACCGTTTGGACGAAAAGCCTTCGGTGAGGGGTATTCTCTCGGACTTGACTTGTGACAGCGACGGGAAGATTGACAAGTTCATCAACGGAGAGTCCAGCCTGCCGCTTCATGAGATGGAAGGAGGAAGAACTTACTATCTGGGAATGTTTTTGGGTGGGGCTTACGAGGAGGCGCTCGGTGGAGTCCACAACTTGTTCGGCGGCCCCAGCGTGGTCAGGGTGTCGCAGAGCGATGGCCCTCACAGCTTTGCGGTCACGCGTGCCGTGCCGGGGCCATCCTGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAGACACTCAAGCACCGCGCGCAGGAGTATGTCAGCCACGACAACGCAGCAGCGCTTCTGGCTGCTGGCCTTGCTCGCACCTTTGACAGAATGCCTTATCTGCTGTCTCTGTCTTCCTTTGTGGCTGACGATGTTGCCGCTGCTGTTCCTGCTGCTCAAGATCTGGGGGAGCAGTGGTCTTATTAA | 2076 | 0.5607 | MPALACCVDAAAPPGYAFAGDISFPAPVALTGVPPATTDDSNNNRWSPSLSAALYNVDGWGGPYFAVNTAGNISVRPHGSDTLSHQEIDLLKIVKKASDPKSLGGLSLQLPLIARFPDVLKNRLESLQSAFDYAIQSGGYESHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVVEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGGTSGEKGKFGLTTAQILRVVKNLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVEYSLEDYAVAVVHAVQCVCDRRSVKHPVICSESGRAIVSHHSVLIFEAVGTSSTTGGGASPALSAQYLAEELSEDYRNLSELAFRGEYETCLVYTEEMKERCVEQFKQGTVCMEQLAAVEGLCELARKAVGAGESVRRYHVNLSVFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEMEGGRTYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDNAAALLAAGLARTFDRMPYLLSLSSFVADDVAAAVPAAQDLGEQWSY* | 692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso6g0060 | 691 | ProSitePatterns | Orn/DAP/Arg decarboxylases family 2 signature 2. | 329 | 342 | IPR022657 | - | |
| Gso6g0060 | 691 | Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 143 | 396 | IPR022644 | GO:0003824 | |
| Gso6g0060 | 691 | Gene3D | Alanine racemase | 117 | 398 | IPR029066 | - | |
| Gso6g0060 | 691 | Gene3D | Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 55 | 597 | IPR009006 | GO:0003824 | |
| Gso6g0060 | 691 | PANTHER | ARGININE DECARBOXYLASE | 1 | 673 | - | - | |
| Gso6g0060 | 691 | SUPERFAMILY | PLP-binding barrel | 116 | 398 | IPR029066 | - | |
| Gso6g0060 | 691 | PANTHER | ARGININE DECARBOXYLASE | 1 | 673 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 116 | 131 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 140 | 154 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 198 | 213 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 224 | 245 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 248 | 270 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 376 | 393 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 499 | 520 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 524 | 549 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | PRINTS | Arginine decarboxylase signature | 574 | 595 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | ProSitePatterns | Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. | 148 | 166 | IPR022653 | - | |
| Gso6g0060 | 691 | CDD | PLPDE_III_ADC | 108 | 595 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | Gene3D | - | 414 | 492 | - | - | |
| Gso6g0060 | 691 | PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 148 | 166 | IPR000183 | GO:0003824 | |
| Gso6g0060 | 691 | PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 172 | 184 | IPR000183 | GO:0003824 | |
| Gso6g0060 | 691 | PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 291 | 304 | IPR000183 | GO:0003824 | |
| Gso6g0060 | 691 | PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 386 | 405 | IPR000183 | GO:0003824 | |
| Gso6g0060 | 691 | PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 574 | 587 | IPR000183 | GO:0003824 | |
| Gso6g0060 | 691 | PIRSF | ARGDC | 34 | 666 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | TIGRFAM | speA: arginine decarboxylase | 46 | 664 | IPR002985 | GO:0006527|GO:0008295|GO:0008792 | |
| Gso6g0060 | 691 | SUPERFAMILY | Alanine racemase C-terminal domain-like | 490 | 598 | IPR009006 | GO:0003824 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso6g0060 | Gso-Chr6 | 604083 | 606945 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso6g0060 | K01583 | - | gmx:548071 | 1343.56 |
Event-related genes