Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0068 ATGCCTGTCCTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGATCGCCTTTACTGGCGTACCTCCGGCCACGGCAGACGACACCAACAACAGCAACAACCATTGGTCGCCGTCTCTCTCCGCCGCCCTTTACAACGTCGACGGCTGGGGCGGCCCCTACTTCGCCGTCAACACCGCCGGGAACATCTCCGTTCGCCCACATGGTTCCGACACGCTGTCGCACCAGGAGATCGATTTGCTGAAGATTGTGAAGAAGGCCTCCGATCCCAAATCTCTCGGGGGTCTCGGCCTTCAGCTACCCCTCATTGTCCGCTTCCCGGACGTTCTCAAGAACCGGTTGGACTCCCTCCAATCGGCTTTCGATTACGCAATCCAATCTGGAGGGTACGAGTCTCATTACCAAGGAGTTTACCCCGTGAAATGCAACCAGGACCGGTTCGTGGTGGAGGATATTGTTAAATTCGGTTCGTCCTTCCGGTTCGGTCTGGAGGCCGGCTCCAAGCCGGAGCTCCTTCTGGCCATGAGCTGTCTTTGCAAAGGCAACCCCGACGCGCTTTTGATTTGCAACGGCTTCAAGGATGCGGAGTACATTTCTCTTGCCCTGGTTGCCAACAAGCTTGCGCTCAACACCGTGATTGTTCTGGAGCAGGAAGAGGAGGTTGATTTGATCGTTGAATTGAGCAAGAAGCTCTGCATTAAGCCCGTGATTGGGCTTCGTGCGAAGCTTAGAACCAAGCATTCTGGGCATTTCGGTGGGACTTCAGGAGAGAAGGGGAAGTTTGGGCTCACCACCGCACAGATTCTGAGGGTTGTGAAGAAGCTGGCCCACGCAGGCATGCTGGATTGCTTGCAACTGCTGCATTTTCATATTGGTTCTCAGATTCCCTCAACCGCGTTGCTTGCTGATGGCGTGGGAGAGGCTGCGCAGATCTACTGCGAGCTGGTTCGGCTCGGGGCGAACATGCGAGTCATCGATATTGGAGGTGGACTGGGCATAGATTACGACGGTTCCAAATCTTGTGACTCAGATATTTCTGTTGAGTACGGTCTCGAGGAGTATGCTGCAGCGGTTGTTCACGCGGTTCAGTGTGTGTGCGACCGAAGGTCCGTGAAACACCCTGTCATCTGCAGCGAGAGTGGGAGAGCCATCGTGTCTCATCATTCGGTCTTGATTTTCGAGGCGGTTGGCACCAGCAGCACAAACGGCGGAGGAGCTCCCCCGGCATTGTCAGCGCATTACCTGGCGGAGGAGCTGTCGGAGGACTACGGATATCTCTCGGAGCTGGCGTTCCGAGGGGACTATGAAACGTGCCTGGTGTACACGGAGGAGATGAAAGAGCGGTGCGTGGAGCAGTTCAAGCAGGGGACGGTGTGTATGGAACAGCTGGCAGCGGTGGAAGGGTTGTGTGAATTGGTGAGGAAGGCGGTTGGGGCGGCGGAATCGGTTCGGAGATATCACGTGAACTTGTCTATTTTCACGTCCGTTCCAGACGCGTGGGGCATTGACCAGGTGTTTCCCATTATCCCCATTCACCGGTTGGAAGAAAAGCCTTCGGTGAGGGGTATTCTCTCGGACTTGACTTGTGACAGCGACGGTAAGATTGACAAGTTCATCAACGGAGAGTCCAGCTTGGCGCTTCATGAAATGGAAGGAGGAAGTTACTATCTGGGAATGTTTTTGGGTGGGGCTTACGAGGAGGCGCTCGGTGGAGTCCACAATTTGTTCGGCGGCCCCAGCGTGATCAGGGTGTCGCAGAGCGATGGCCCTCACAGCTTCGCGGTGACGCGTGCCGTGCCGGGGCCATCCTGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAGACACTCAAGCACCGCGCGCAGGAGTATGTCAGCCACGACAACGCAGCAGCGGTTCTGGCCGCTGGCCTTGCTCGCACCTTTGACAGAATGCCTTATCTGCTGCCTCTGTCTTCCTTTGTGGCTGATGATGTTGCTGCTGCTGCTGCTGTTCCTGCTGGTGAAGATGATGAAGAGCAGTGGTCTTATATATGTGCTTGA 2094 0.5597 MPVLACCVDAAAPPGYAFAGDISFPAPIAFTGVPPATADDTNNSNNHWSPSLSAALYNVDGWGGPYFAVNTAGNISVRPHGSDTLSHQEIDLLKIVKKASDPKSLGGLGLQLPLIVRFPDVLKNRLDSLQSAFDYAIQSGGYESHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVLEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGGTSGEKGKFGLTTAQILRVVKKLAHAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVEYGLEEYAAAVVHAVQCVCDRRSVKHPVICSESGRAIVSHHSVLIFEAVGTSSTNGGGAPPALSAHYLAEELSEDYGYLSELAFRGDYETCLVYTEEMKERCVEQFKQGTVCMEQLAAVEGLCELVRKAVGAAESVRRYHVNLSIFTSVPDAWGIDQVFPIIPIHRLEEKPSVRGILSDLTCDSDGKIDKFINGESSLALHEMEGGSYYLGMFLGGAYEEALGGVHNLFGGPSVIRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDNAAAVLAAGLARTFDRMPYLLPLSSFVADDVAAAAAVPAGEDDEEQWSYICA* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0068 697 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 150 168 IPR022653 -
Gso4g0068 697 Gene3D Alanine racemase 119 400 IPR029066 -
Gso4g0068 697 PANTHER ARGININE DECARBOXYLASE 1 677 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 118 133 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 142 156 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 200 215 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 226 247 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 250 272 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 378 395 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 501 522 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 526 551 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PRINTS Arginine decarboxylase signature 575 596 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 SUPERFAMILY PLP-binding barrel 118 400 IPR029066 -
Gso4g0068 697 SUPERFAMILY Alanine racemase C-terminal domain-like 493 599 IPR009006 GO:0003824
Gso4g0068 697 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 145 398 IPR022644 GO:0003824
Gso4g0068 697 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 150 168 IPR000183 GO:0003824
Gso4g0068 697 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 174 186 IPR000183 GO:0003824
Gso4g0068 697 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 293 306 IPR000183 GO:0003824
Gso4g0068 697 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 407 IPR000183 GO:0003824
Gso4g0068 697 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 575 588 IPR000183 GO:0003824
Gso4g0068 697 PANTHER ARGININE DECARBOXYLASE 1 677 - -
Gso4g0068 697 TIGRFAM speA: arginine decarboxylase 48 665 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 PIRSF ARGDC 35 665 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 331 344 IPR022657 -
Gso4g0068 697 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 57 598 IPR009006 GO:0003824
Gso4g0068 697 CDD PLPDE_III_ADC 115 596 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gso4g0068 697 Gene3D - 417 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0068 Gso-Chr4 604041 606903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0068 K01583 - gmx:100793552 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0068 4 604041 606903 Gso4g0068 4 604041 606903 ECH
Gso4g0068 4 604041 606903 Gso6g0060 6 604083 606945 GST