Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0056 ATGTCCAAGTCCAACGTTTTTGAATTTTTGCACCAATCCCGTGTAAGTGGCAATGTCTCGGCCATTAAGAAACTCCATGCTCAGCTACTCAGAAGAGGCATGCTCTTCCTCTCCCATCATCTCCACACCCAACTCATTGCCACATATGCCGCATGCCTCCCTAACAACACCCGTCAATCCCTCAACAACTTCTTCAAATGCATGAATTCCACCAACCCATTACACTTCAACGCCACAATATCCGATTTCTGTCGCAAAGGTTTCCCCTTTCTCGCTCTCTCCTCCTTCTCCTTCATGCACACCAATGGTGTTCCCTTGGATACATACGCTTTGTGTAGCACGTTGACCGCTTCCTCCAAAGTCAAAGATCTTAATTTGGGGAAGCAGATACACGCCCAAGTGGAAAAATCAGGTTGGTCTTCTAGCGTGTTTGTGGGTAGTGCTCTCATTGATCTGTACTCCAAATTGTCGAATGTAAAAGATGCAGCCCATGTGTTCGATGAAATTTCTGACAAGAACACTGTGTGTGCCAATGCACTTCTGTCGGGTTATGGCGAGGCCGGCCTGTGGGTTCAGGAACTTGAACTAGTTAGGAAGATGCCCGTGTTGAAATTGAAGCATGATCACTTTACTCTATCAGCAGCTTTGCGTGCATGCACTGGATTATCTGCTGTTGAAATGGGTAGGCAAGTGCATGGTTACTTGCTCCGTACGACACCTGATATAGAGAGTGATGTGTTTCTTCAGAGCGCGTTGGTTGAGATGTATGGCAAGTGTGGATTAGTAAAGAAGGCTTGGCAAGTGTTCAAGTTGGTTGGGATGGAGATTAGAAAAGAAGTAAGAAGCAGGGACGTTGTGTTATGGACTTCAATGTTTGGTGTGTATGGTAGGAATGGGCATTACAAGGAAGTGCTTGACTTGTATGATGAGATGTTGGTGGAAGGAATCAGACCGGATGGAATAGCATTCTTGACAGTGATCTCAGCTTGTGGTCACACTGGCCAAGTTCATGCTGGTATCAAGTACTTTGAGTGTATGGCTAATGATTTCATGTTAGATCCTGGTCCAGAACATTACAGCTGCCTGGTTGATTTGCTTTGTAGGGCTGGTGAATTGCAGAAGGCGTGGGAATTGCTGAATGAGACACTCTATAAGGGAATGGGAAATTGTACTGTGTCCATGTGGGGAGCACTACTCAGTGCTTGTGTGGATCGTGGGGATTTAGACCTTGGCAAATTGGCAGCTGAGAGGGCCCTTGAGTTAGATCCCCAAAATGTTGGGATATTCATTATGCTATCAAATCTGTATGCCCGGTTTGGTATGTGGGAGGAGATCGGTCACTTGAGGGTATTGATCAAAGCAAGAGGGCTAAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGAGTGAGTAG 1413 0.46 MSKSNVFEFLHQSRVSGNVSAIKKLHAQLLRRGMLFLSHHLHTQLIATYAACLPNNTRQSLNNFFKCMNSTNPLHFNATISDFCRKGFPFLALSSFSFMHTNGVPLDTYALCSTLTASSKVKDLNLGKQIHAQVEKSGWSSSVFVGSALIDLYSKLSNVKDAAHVFDEISDKNTVCANALLSGYGEAGLWVQELELVRKMPVLKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDIESDVFLQSALVEMYGKCGLVKKAWQVFKLVGMEIRKEVRSRDVVLWTSMFGVYGRNGHYKEVLDLYDEMLVEGIRPDGIAFLTVISACGHTGQVHAGIKYFECMANDFMLDPGPEHYSCLVDLLCRAGELQKAWELLNETLYKGMGNCTVSMWGALLSACVDRGDLDLGKLAAERALELDPQNVGIFIMLSNLYARFGMWEEIGHLRVLIKARGLRKDVGCSWVQVSE* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0056 470 SUPERFAMILY TPR-like 343 444 IPR011990 GO:0005515
Gso6g0056 470 Pfam E motif 407 467 IPR046848 -
Gso6g0056 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Gso6g0056 470 Gene3D Tetratricopeptide repeat domain 72 243 IPR011990 GO:0005515
Gso6g0056 470 Gene3D Tetratricopeptide repeat domain 244 425 IPR011990 GO:0005515
Gso6g0056 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 467 - -
Gso6g0056 470 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Gso6g0056 470 TIGRFAM PPR: pentatricopeptide repeat domain 359 381 IPR002885 -
Gso6g0056 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Gso6g0056 470 Pfam PPR repeat 358 386 IPR002885 -
Gso6g0056 470 Pfam PPR repeat 251 270 IPR002885 -
Gso6g0056 470 Pfam PPR repeat 176 201 IPR002885 -
Gso6g0056 470 Pfam PPR repeat 147 172 IPR002885 -
Gso6g0056 470 Pfam PPR repeat family 283 330 IPR002885 -
Gso6g0056 470 PANTHER - 7 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0056 Gso-Chr6 539977 541389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0056 18 470 Glycoside Hydrolase AT3G49170 30.989 1.66e-72 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0056 - - gmx:100798332 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0063 4 542573 543991 Gso6g0056 6 539977 541389 GST