Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0033 ATGGAAACTCGTAGTCGTAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCATCCTCGTCCACCACCACCACCACCGCCTCTCGTTCCGCCAAGTGCTCTCGTCTTTCTTCTTCTTCTTCTTCCATCCCAAACACAACTACTGCTAATACACGTTCTCGTTCCGCCAGGAACAACAACAACAACTCCGTTTCTCCCATGGACCCCACCAATGAATCCTCCGGTTCCAGACGTGATCGCCGCGGCAAGAATTTCGATAGGGACAATTCGGACAAAGGGAAGGAGAAAGAACATGATGTTAGGATTAGGGATGCGGAGCGGGAGCGAGCCTTGGCGTTGAACTTGGAGGCTGAAGATGTTGGGGATGACGACGATGATAATGATAGTGAGGGCGGTGTCGGAATTCTGCACCAGAATTTGATTTCTGCCAGTACCTTTCGAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATTTGCTTCCTGCTACGGCTATGGGCGGTTCTGTGCCCTCTTCTCACCAGACTGGCGGACTCAAGCAGATATTGTCTGGTTTGCGTGCCGATGGGGAAGAAGGTCGTCAGGTTGAGGCATTGACGCATCTTTGTGACATGCTCTCCATTGGCACTGAAGATTCATTAAGTACATTTTCGGTTGATTCATTTGTTCCTGTGCTAGTGGGCTTGCTTAATCATGAGAGCAATCCCGATGTCATGCTTCTTGCGGCCAGGGCGCTAACCCATTTATGTGATGTGCTTCCTTCATCCTGTGCTGCTGTTGTGCATTATGGTGCAGTCTCTATCTTCTGTGCGAGGCTGCTTACCATAGAGTATATGGACTTGGCTGAGCAGTCTCTTCAAGCACTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCGACAGGAGTTCAGCGGGTGGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTCCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCACTTTTGACAAACCTCCTTCAGTACCACGACTCCAAGGTCCTGGAACATGCCTCTGTTTGTTTGACACGAATAGCTAAAGCGTTTGCATCATCTCCAGACAAATTAGATGAATTGTGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCGGTTCTGGAGGTGGGCAGGCTTCTCTCAGCACCCCAACATATACTGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCATGGAGCTAGTGGCATACTTAAAGATATACTATCCGGTTCCGGTGTTTCTTCTAACACCTCTGTTTCGCCTGCATTGAGTAGGCCAGCGGATCAGATATTTGAGATTGTGAACCTGGCAAATGAACTTCTGCCTCCATTGCCTCAAGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGAGTCTGTTGTGAAAAAATCTCCTCCTTCTGGGAATCCCGGGATACAAGAAGACACAAATGGAAATGTTCATGAAATATCAGCTCGTGCAAAATTATTAAATGATAAGCCTGAGTTACTTAAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCTAGCGTCAATGGTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCTAAAATGTTTGTCAGAGAAGGTGTGGTTCATGCAGTTGACCAACTTATTTTGGCTGGAAATGCAACTAATATATCTACACAAACATCATCTGCTGAGAAGGATACTGATTCTGTATCTGGAACTTCATCTCGCTCTAGACGCTATCGCCTGCGCAGTGGTAATTCAAATCCCGATGCGAACCGTTCGGATGATTTGAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCACCAAGTTCTGTGGAAACTCCAACAACTAATTCTAGTATCCGTGCATCCATTAGCTCAGTTGCTAATGCTTTTAAAGACAAGTACTTTCCTTCTGATCCTGGGTCTGTTGAAGTGGGTGTTAGTGATGATCTTTTGCATCTGAAAAATCTATGCTCGAAGTTGAACACTGGTGTTGATGACCAAAGAAGTAAGGCCAAGGGAAAAGTTGAAGCTTTTGGATTTGATCTGGATGATGATTCTACTAACACAGAAGAGTATTTGATTGGGGTGATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATAGTGTATCTACTTTTGAATTTATCGGTAGTGGTGTTGTTGAAGCCTTGCTAAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGAATATCAGAAACCAATCTCCCCAAGCTTCGCCAACAGGCACTTACAAGGTTCAAGTCATTTGTTGCTGTTGCATTACCTTTGAGCATTGACAATGGGGCTGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGTGTTGTCCTCCTTGGAGCGTTTCCCTGTAATGCTGAGTAATTCATCTCGGTCATCTAGTGGAAGTGGACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCATAAAATTACGTTTCTGTCGAGCCCAGGGTGAAAAGTCACTTAAGGATTATTCATCCAGTGTGGTACTGATTGATCCGTTAGCAAGTCTAGCAGCCATCGAGGAATTTCTATGGGCTCGTGTCCAGCGTGGTGAATCTGGTCTAAAGTCTACTGTAGGCACTGAAAATTCTGAATCTGGAACAACTCCTGCAGGGGCTGGTGTTTCATCTCCTTCCTCTTATATTCCCTCCACTGCCTTTCGTTATTCAACCGGATCCAGATCCAGATCATCTGTTAATATAGGAGATACACCTAGAAAAGAAATATTTCAAGACAATGGCACGAGCTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAACCTGCGCAGGAGGAAGCACGGGGACCCCAAACAAGGAATGCAGTGCGCAGAAGAGCAGCTCTAGATAAAGACGCTCAAATGAAACCTGCAAATGGCGACTCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCGTGAAGATGTACGGAGGGATTATTATCTTCCTGTCTACTTGCCTGACGAAGTGCATGATGTGAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTGCTCCTGCAACAAGTGATAGCCAGACTAATGCAGCTTCAGGTTCTAGCAGCAAAGCGGGTACAGCCAGGGGTTGTGACTCTGCTGATTTTAGGAGTGGGTATTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATATGCTAATAGCAGAGGTTTCAGGGGTGGCAGAGATAGGCATGGGCGCCTGTTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATTTTTACTGCTGGTGGGAAGCAGCTTAATAGGAATTTGACTATATATCAGGCAATTCAAAGACAGCTCATGCTAGATGAAGATGATGATGAGAGACTTGCTGGCAGTGACCGTGTATCTAGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATCAAAGGGCAGAAAACCAGCCAGATAAGGCATCCAATGGTGGATCAAGTTCAAATACTTCAAAATCTGCCAAATCTGGGTCTGCATTAAATTCCAGCTCAGAAGCTAAATTGCATCAGACATCTGTTCTAGACAGTATATTGCAGGGAGACTTGCCATGTGATCTAGAGAAATCTAATCCTACCTACAATATTTTGGCACTCCTGCGTGTGCTGGAGGGTTTGAACCAGCTTGCGCCTCATTTGAGGACCCAAATGGTTTCTGATAGCTTCGCCAAGGGAAAAATCTTGGATTTAGATGAGCTAGGTGTTACAACTGGTGCTAGGGTGCTTCCAGAGGAATTTGTGAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTTGCACTATGCAGTGGTAGTCTTCCCTTATGGTGTTGCCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGACACCCGACGACAGTACTTTTATTCTACCGCATTTGGGTTATCTCGTGCATTGTATCGACTTCAGCAGCAGCAAGGCGCTGATGGTCATGGATCAACAACTGAGAGGGAGGTGAGAGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTGTCTTGGATTCTGCTGCAAAAGTTATGGGGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGGACTGGCCTGGGTCCCACCCTTGAGTTTTATACAATTCTAAGTCATGATTTGCAACAAGTTGGATTGCAAATGTGGAGATCTTATTCTTCAGACAAACATCAAATGGAAATTGATAGAGATGAAAAGAAAAAGAAAAGTGATGGCTCTGGGCCTAATTTGGCTGGAGATGGAGAACTTGTTGAAGCTCCTCTGGGGTTGTTTCCTCGGCCTTGGCCTACAAATTCTGATGCATCAGAGGGTAGCCGGTTTTCAAAAGTCGTTGAGTATTTCCGGCTGCTAGGTCGTGTTATGGCTAAAGCTCTTCAAGACGGACGACTTTTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCGGCCAAGATCTTGATTTGCATGACATTCTGTCCATTGATGCTGAGCTTGGGAAGACTTTGCAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTATTGGTGGTAGCTATACAGATACAATTGTTAACTTGCATTTTCATGGGGTGCCAATCGAAGATCTTTGCTTAGATTTTACACTCCCTGGTTATCCTGAATACACCTTGAAGCCAGGAGATGAAATTGTTGATATCAACAATTTGGAGGAGTATATATCCTTGGTGGCAGATGCAACTGTCAAGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAGGTTTTTGACATCTCGTCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCTGCAGGGAGTTGTGGGAGTCTGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACAATGCAAAGAGCCCTGCCATTATTAATTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACCGCAGTTAATACTTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAACGAGGGCCGGGGATCCTTTGATTTATCATGA 5688 0.4464 METRSRKRAEASSAAPSSSSSTTTTTASRSAKCSRLSSSSSSIPNTTTANTRSRSARNNNNNSVSPMDPTNESSGSRRDRRGKNFDRDNSDKGKEKEHDVRIRDAERERALALNLEAEDVGDDDDDNDSEGGVGILHQNLISASTFRGLLRKLGAGLDDLLPATAMGGSVPSSHQTGGLKQILSGLRADGEEGRQVEALTHLCDMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAKAFASSPDKLDELCNHGLVTQAASLISTSGSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLHGASGILKDILSGSGVSSNTSVSPALSRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKESVVKKSPPSGNPGIQEDTNGNVHEISARAKLLNDKPELLKQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGIFSKMFVREGVVHAVDQLILAGNATNISTQTSSAEKDTDSVSGTSSRSRRYRLRSGNSNPDANRSDDLKSPVPVNVGLPPSSVETPTTNSSIRASISSVANAFKDKYFPSDPGSVEVGVSDDLLHLKNLCSKLNTGVDDQRSKAKGKVEAFGFDLDDDSTNTEEYLIGVISDMLKELGKGDSVSTFEFIGSGVVEALLNYFSCGYFSKDRISETNLPKLRQQALTRFKSFVAVALPLSIDNGAVAPMTVLVQKLQNVLSSLERFPVMLSNSSRSSSGSGRLSSGLSALSQPIKLRFCRAQGEKSLKDYSSSVVLIDPLASLAAIEEFLWARVQRGESGLKSTVGTENSESGTTPAGAGVSSPSSYIPSTAFRYSTGSRSRSSVNIGDTPRKEIFQDNGTSSSKSKGKAVLKPAQEEARGPQTRNAVRRRAALDKDAQMKPANGDSTSEDEELDISPVEIDEALVIEDDDISDDEDEDREDVRRDYYLPVYLPDEVHDVKLGDSAEESTVAPATSDSQTNAASGSSSKAGTARGCDSADFRSGYSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGRLLFGSSNDPPKLIFTAGGKQLNRNLTIYQAIQRQLMLDEDDDERLAGSDRVSSDGSSLWGDIYTITYQRAENQPDKASNGGSSSNTSKSAKSGSALNSSSEAKLHQTSVLDSILQGDLPCDLEKSNPTYNILALLRVLEGLNQLAPHLRTQMVSDSFAKGKILDLDELGVTTGARVLPEEFVSGKLTPKLARQIQDALALCSGSLPLWCCQLTKACPFLFPFDTRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLDSAAKVMGMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQQVGLQMWRSYSSDKHQMEIDRDEKKKKSDGSGPNLAGDGELVEAPLGLFPRPWPTNSDASEGSRFSKVVEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILSIDAELGKTLQEFNALVCRKHYIESIGGSYTDTIVNLHFHGVPIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVADATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGCRELWESETLADHIKFDHGYNAKSPAIINLLEIMGGFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGRGSFDLS* 1896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0033 1895 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 49 1895 - -
Gso6g0033 1895 Gene3D Hect, E3 ligase catalytic domain 1766 1893 - -
Gso6g0033 1895 CDD HECTc 1472 1890 IPR000569 GO:0004842
Gso6g0033 1895 SMART hect_3 1483 1895 IPR000569 GO:0004842
Gso6g0033 1895 MobiDBLite consensus disorder prediction 73 103 - -
Gso6g0033 1895 Gene3D - 171 658 IPR011989 -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 655 691 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 655 716 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1274 1302 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1047 1061 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 965 1111 - -
Gso6g0033 1895 ProSiteProfiles HECT domain profile. 1595 1895 IPR000569 GO:0004842
Gso6g0033 1895 MobiDBLite consensus disorder prediction 10 72 - -
Gso6g0033 1895 Gene3D Hect, E3 ligase catalytic domains 1413 1657 - -
Gso6g0033 1895 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 49 1895 IPR045322 GO:0006511|GO:0061630
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1133 1157 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1073 1105 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1541 1566 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1541 1557 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1129 1161 - -
Gso6g0033 1895 Pfam HECT-domain (ubiquitin-transferase) 1521 1895 IPR000569 GO:0004842
Gso6g0033 1895 SUPERFAMILY Hect, E3 ligase catalytic domain 1464 1888 IPR035983 GO:0004842
Gso6g0033 1895 MobiDBLite consensus disorder prediction 1 103 - -
Gso6g0033 1895 MobiDBLite consensus disorder prediction 965 1033 - -
Gso6g0033 1895 SUPERFAMILY ARM repeat 178 646 IPR016024 -
Gso6g0033 1895 SMART arm_5 336 374 IPR000225 GO:0005515
Gso6g0033 1895 SMART arm_5 293 333 IPR000225 GO:0005515
Gso6g0033 1895 SMART arm_5 210 251 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0033 Gso-Chr6 328103 338159 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0033 K10590 - gmx:100818972 3427.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0034 4 331442 341760 Gso6g0033 6 328103 338159 GST