Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0034 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCACCACCCCTTCTCGTTCAGCCAAGCGCTCTCGTCTTTCTTCTTCTTCTTCTTCCATCCTACCTGTTAATACACGTTCTCGTTCCGCCAGGAATAACAACAACAACAACAACTCCGGTTCCATTTCTTTCATGGACCCCACCAATGAATCCTCCGGGTCCCGACGTGATCGCCGTGGCAAGAATTTCGATAGGGAAAATTCGGACAAAGGGAAGGAGAAGGAACAGGATGTTAGGATTAGGGATGCGGAGCGGGAGCGAGAGCGAGCCTTGGCGTTAAACATGGAGAGTGAAGATGTTGGGGATGACGATGATAATGATAGTGACGGCGGTGTGGGAATTCTGCACCAGAATTTGACGTCTGCCAGTAGTGCCCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATTTGCTTCCTGCTACTGCTATGGGCGGTTCTGCGTCATCTCCTCATCAGAGTGGCAGACTCAAGAAGATTTTGTCTGGCTTGCGTGCCGATGGGGAAGAAGGTCGTCAGGTTGAGGCATTGACGCAGCTTTGTGACATGCTCTCCATTGGCACTGAAGATTCCCTCAGCACATTTTCGGTTGACTCATTTGTTCCTGTGCTAGTGGGCTTGCTTAATCACGAGAGCAATCCCGATGTCATGCTTCTTGCGGCCAGGGCGCTAACCCATTTATGTGATGTGCTTCCTTCATCCTGTGCTGCTGTTGTGCATTATGGTGCTGTCTCTATCTTCTGTGCGAGGCTGCTCACCATAGAGTATATGGACTTGGCTGAGCAGTCTCTTCAAGCACTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTAGAGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTGGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTCCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCACTTTTGACAAACCTCCTTCAGTACCACGACTCCAAGGTCCTGGAACATGCCTCTGTTTGTTTGACACGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATGAATTGTGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCAGTTCTGGAGGTGGGCAGGCTTCTCTCAGCACTCCAACATATACTGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTATCCGGTTCCGGTGTTTCTTCTAACACCTCTGTTTCGCCTGCATTGAGTAGGCCAGCGGATCAGATATTTGAGATTGTGAACCTGGCAAATGAACTTCTGCCTCCATTGCCTCAAGGAACCATTTCCCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTCTGTTGTGAAAAAATCCTCTTCTGGCAATTCTGGGATACAAGAAGACACAAATGGAAATGTTCATGAGATATTGGCTCGTGAGAAATTATTAAATGATCAGCCTGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCTAGCGTCAATGGTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTACTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCTAAGATGTTTGTCAGAGAAGGTGTGGTTCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATATATCCACACAAACATCATCTGCTGAGAAGGATAATGATTCTGTATCTGGAACTTCATCTCGCTCTAGACGCTATCGCCTGCGCAGTGGTAATTCAAATCCCGATGCGAACCCTTCAGATGATTTAAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCACCAAGTTCTGTAGAAACTCCAACAACTAATTCTAGTATCCGTGCATCTGTTAGCTCAGTTGCTAGAGCTTTTAAAGACAAGTACTTTCCTTCTGATCCTGGGTCTGTTGAAGTGGGTGTTAGTGATGATCTTTTGCATCTGAAAAATCTATGCACGAAGTTGATCACTGGTGTTGATGACCAAAGAAGCAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGGATGATAATTCTAGTAACACAGAAGAGTATTTGATTGGGGTGATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATAGTGTATCTACTTTTGAATTTATCGGTAGTGGTGTTGTTGAAGCCTTGCTAAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGAATATCAGAAACCAATCTCCCCAAGCTTCGCCAACAGGCACTTTCAAGGTTCAAGTCATTTGTAGCTGTTGCACTACCTTTGAGCATTGACAATGGGGCTGTTGCTCCTATGACTGTCTTAGTTCAGAAGCTTCAAAATGCGTTGGCCTCCTTGGAGCGTTTCCCTGTTATGCTGAGTAATTCATCTCGGTCATCTAGTGGAAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCATAAAATTACGTCTCTGCCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTGGTACTGATTGATCCATTAGCAAGTCTAGCAGCCATCGAGGAATTTCTATGGGCTCGTGTCCAGCGTGGTGAATCTGGTCAGAAGTCTACTGTAGGCACTGAAAATTCTGAATCTGGAACAACTCCTGCTGGGGCAGGTGTTTCATCTCCTTCCTCTTATACTCCCTCCACTGCCCATCGTCATTCTACTAGAACCAGATCATCTGTTAATATAGGAGATACACCTAGAAAAGAAACATCTCAAGACAAAGGAACGAGCTCATCAAAGAGCAAGGGTAAAGCTGTATTAAAACCTGCGCAGGAGGAAGCGCAAGGACCCCAAACAAGGAATACAGTGCGCAGAAGAGCAGCTCTTGATAAAGTCGCTCAAATGAAACCTGCAAATGGCGACTCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGCTGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCATGAAGATGTGCTGAGGGATGATTCTCTTCCTGTCTGCTTGCCTGACAAAGTGCATGATGTGAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTGCTCCAGCAACAAGTGATAGCCAGACTAATGCAGCCTCAGGTTCAAGCAGCAAAGCTGGTACAGCCAGGGGTTCTGACTCCGCTGATTTTAGGAGTGGGTTTTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATATGCTAATAGCAGAGGTTTCAGGGGCGGCAGAGATAGGCATGGGTGCCTGTTGTTTGGTAGTTCTAATGATCCTCCGAAGTTGATTTTTACTACTGGTGGGAAGCAGCTTAATAGGAATCTGAGTATATATCAGGCAATTCAAAGACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCTGGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATCAAAGGGCAGAAAACCAGCCAGATAAGGCGTCTACTGGAGGATCAAGTTCAAATACTTCAAAATCTGCCAAATCTGGGTCTGCCTTAAATTCAAGCTCAGAAGCTAAATTGCATCAGACATCTGTTCTAGACAGTATATTGCAGGGAGAATTGCCATGTGATCTAGAGAAATCTAATCCCACCTACAATATTTTGGCACTCCTGCGTGTGCTGGAGGGTTTCAACCAACTTGCGCCTCGTTTGAGGGTCCTAATGGTTTCTGATAGCTTTGCCAAGGGAAAAATCTTGGATTTAGATGAGCTATGTGTTACAACTGGTGCTAGGGTGCTTCTAGAGGAATTTGTAAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTTGCACTATGCAGTGGTAATCTTCCCTTATGGTGTTACCAGTTGACTAAAGCGTGCCCTTTCTTGTTTCCTTTTGAGACCCGACGACAGTACTTTTATTCTACCGCATTTGGGTTATCTCGTGCACTGTATCGACTTCAACAGCAGCAAGGTGCTGATGGCCATGGTTCAACAACTGAGAGGGAGGTGAGAGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTGTCCTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACCCTTGAGTTTTATACAATTCTAAGTCATGATTTGCAAAAAGTTGGACTGCAAATGTGGAGATCTTATTCTTCAGACAAACATCAAATGGAAATAGATGGAGATGAAAAGAAAAAGAAAAGTGAAGGCTCTGGGCCTAATTTGGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTGGGGTTGTTTCCTCGGCCATGGCCTACAAATTCTGATGCTTCAGAGAGTAGCCAGTTTTCAAAAGTCATTGAGTATTTCCGGCTGCTAGGTCGTGTTATGGCTAAAGCTCTTCAAGACGGACGACTACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTATTGGTGGTAGCTATACAGATACAATTGTTAACTTGTATTTTCATGGTGCACCAATCGAAGATCTTTGCTTAGATTTTACTCTCCCTGGTTATCCTGAATACACCTTGAAGCCAGGAGATGAAATTGTTGATATCAACAATTTGGAGGAGTATATATCCTTGGTGATCGATGCAACTGTCAAGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAGGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCCGCAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACAATGCAAAGAGCCCTGCCATTGTTAATTTACTTGAAATTATGGGAGAGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAGTTGCTCTATGCAATCAGTGAGGGCCAGGGATCCTTTGATTTATCATGA 5676 0.4454 METRSRKRAEASSAAPSSSSTTPSRSAKRSRLSSSSSSILPVNTRSRSARNNNNNNNSGSISFMDPTNESSGSRRDRRGKNFDRENSDKGKEKEQDVRIRDAERERERALALNMESEDVGDDDDNDSDGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPATAMGGSASSPHQSGRLKKILSGLRADGEEGRQVEALTQLCDMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGTSGILKDILSGSGVSSNTSVSPALSRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKGSVVKKSSSGNSGIQEDTNGNVHEILAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNISTQTSSAEKDNDSVSGTSSRSRRYRLRSGNSNPDANPSDDLKSPVPVNVGLPPSSVETPTTNSSIRASVSSVARAFKDKYFPSDPGSVEVGVSDDLLHLKNLCTKLITGVDDQRSKAKGKVKASGFGLDDNSSNTEEYLIGVISDMLKELGKGDSVSTFEFIGSGVVEALLNYFSCGYFSKDRISETNLPKLRQQALSRFKSFVAVALPLSIDNGAVAPMTVLVQKLQNALASLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWARVQRGESGQKSTVGTENSESGTTPAGAGVSSPSSYTPSTAHRHSTRTRSSVNIGDTPRKETSQDKGTSSSKSKGKAVLKPAQEEAQGPQTRNTVRRRAALDKVAQMKPANGDSTSEDEELDISPVEIAEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVAPATSDSQTNAASGSSSKAGTARGSDSADFRSGFSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGCLLFGSSNDPPKLIFTTGGKQLNRNLSIYQAIQRQLVLDEDDDERFAGSDYVSGDGSSLWGDIYTITYQRAENQPDKASTGGSSSNTSKSAKSGSALNSSSEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGFNQLAPRLRVLMVSDSFAKGKILDLDELCVTTGARVLLEEFVSGKLTPKLARQIQDALALCSGNLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSYSSDKHQMEIDGDEKKKKSEGSGPNLAGDGELVQAPLGLFPRPWPTNSDASESSQFSKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLCQDLDLHDILFIDAELGKTLQEFNALVCRKHYIESIGGSYTDTIVNLYFHGAPIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVIDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGRRELWEAETLADHIKFDHGYNAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNNSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1 131 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 10 69 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 960 1108 - -
Gso4g0034 1891 SMART arm_5 292 332 IPR000225 GO:0005515
Gso4g0034 1891 SMART arm_5 209 250 IPR000225 GO:0005515
Gso4g0034 1891 SMART arm_5 335 373 IPR000225 GO:0005515
Gso4g0034 1891 MobiDBLite consensus disorder prediction 652 715 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1129 1163 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 960 1011 - -
Gso4g0034 1891 ProSiteProfiles HECT domain profile. 1591 1891 IPR000569 GO:0004842
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1537 1553 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1124 1163 - -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1270 1300 - -
Gso4g0034 1891 Gene3D Hect, E3 ligase catalytic domains 1409 1653 - -
Gso4g0034 1891 Pfam HECT-domain (ubiquitin-transferase) 1561 1891 IPR000569 GO:0004842
Gso4g0034 1891 MobiDBLite consensus disorder prediction 652 689 - -
Gso4g0034 1891 SUPERFAMILY ARM repeat 177 646 IPR016024 -
Gso4g0034 1891 Gene3D Hect, E3 ligase catalytic domain 1762 1889 - -
Gso4g0034 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 45 1891 IPR045322 GO:0006511|GO:0061630
Gso4g0034 1891 MobiDBLite consensus disorder prediction 70 115 - -
Gso4g0034 1891 Coils Coil 99 119 - -
Gso4g0034 1891 SUPERFAMILY Hect, E3 ligase catalytic domain 1460 1884 IPR035983 GO:0004842
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1537 1560 - -
Gso4g0034 1891 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 45 1891 - -
Gso4g0034 1891 SMART hect_3 1479 1891 IPR000569 GO:0004842
Gso4g0034 1891 CDD HECTc 1468 1886 IPR000569 GO:0004842
Gso4g0034 1891 Gene3D - 167 657 IPR011989 -
Gso4g0034 1891 MobiDBLite consensus disorder prediction 1069 1103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0034 Gso-Chr4 331442 341760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0034 K10590 - gmx:100791450 3385.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0034 4 331442 341760 Gso4g0034 4 331442 341760 ECH
Gso4g0034 4 331442 341760 Gso6g0033 6 328103 338159 GST