Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0017 ATGAAGAAGAGGAGCTGCAGCAGTAGTAGTTCAGTTTTTGAGGAGGCGAATGGAGTGGAGGATGAGGCCGAACCTCAACAACCTTCATCTTGTGCAGCAGCAGCACTTGATGAGTTGCATAAAGAGAAAAATGAGAATGGAGAAGAAACCCTCGTGCCTCCCAATCCCAATCTTGACGATGGCTTCTATGAAATCGAAACAATACGCCGTAAGAGGCTACGCAAGGGTCAGCTCCAGTACCTAATCAAATGGCGTGGATGGCCTGAGACTGCCAACACTTGGGAGCCTCTTGGAAATCTACAGTCCGTTCCTGATCTCATTGATGCTTTTGAGGAAAGCCTCCTCAAGTCAGGAAAACATCACAAGCGCAAGCGCAAGCATGCTGATGTGGTTCAACTCACCCAACTCAAGAAGCGCTCTGAACGTTCTACCACTTCTTACAGCCTTAGACATTTCCCACCCCAAGTTCCCACCCTTACAAATGATTACGATCCAAAGCTCAGTGAACTTAAGGAGGCACCAACGAACACTGGGGTTCAGCTAGATAACCTTGCAATACATTTCCAACATCCAATTCCAAGCAGAGGAGCAAAAAGGAGAAAATCTGCTTCTTCTGTCAAGAGGTTCAAGAGAGACCCAGATGCAGCTGCAATTCAACCAATTGCTGCTCCTATCCACATGCCTGATGCTACTAATACTGCCTGCAATATTGTCAAGATTATCAAGCCAATAGGCTATTCAGCTTCATTATCTGACAACATGCACGATGTTTTAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGATAACAGATATCTCAAGGCATACAATCCACTTCTGCTGATCAATTTCTATGAGATGCATCTCCGGTATACTCCTACGGCGTGA 903 0.4585 MKKRSCSSSSSVFEEANGVEDEAEPQQPSSCAAAALDELHKEKNENGEETLVPPNPNLDDGFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLGNLQSVPDLIDAFEESLLKSGKHHKRKRKHADVVQLTQLKKRSERSTTSYSLRHFPPQVPTLTNDYDPKLSELKEAPTNTGVQLDNLAIHFQHPIPSRGAKRRKSASSVKRFKRDPDAAAIQPIAAPIHMPDATNTACNIVKIIKPIGYSASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMHLRYTPTA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0017 300 Gene3D - 37 113 - -
Gso6g0017 300 MobiDBLite consensus disorder prediction 1 15 - -
Gso6g0017 300 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 15 144 IPR044251 GO:0006325|GO:0031507
Gso6g0017 300 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 160 299 IPR044251 GO:0006325|GO:0031507
Gso6g0017 300 ProSitePatterns Chromo domain signature. 80 100 IPR023779 -
Gso6g0017 300 SMART chromo_7 62 115 IPR000953 -
Gso6g0017 300 SMART ChS_2 226 299 IPR008251 GO:0005634
Gso6g0017 300 Pfam Chromo (CHRromatin Organisation MOdifier) domain 63 112 IPR023780 -
Gso6g0017 300 CDD CD_CSD 63 112 - -
Gso6g0017 300 SUPERFAMILY Chromo domain-like 51 115 IPR016197 -
Gso6g0017 300 MobiDBLite consensus disorder prediction 1 58 - -
Gso6g0017 300 ProSiteProfiles Chromo and chromo shadow domain profile. 63 122 IPR000953 -
Gso6g0017 300 MobiDBLite consensus disorder prediction 142 161 - -
Gso6g0017 300 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 15 144 - -
Gso6g0017 300 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 160 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0017 Gso-Chr6 182666 187550 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0017 - - gmx:100807755 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0016 4 180493 186210 Gso6g0017 6 182666 187550 GST