LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g0016	ATGAAGAAGAGGAGCAGCAGCAGCAGCAGCAGTAGTTCAGTTTTTGAGGCGAATGGAGTGGAGGAACCTCAACAACCTTCATCCTGTGCAGCAGCAGCAGCAGCAGCACTTGATGAGTTGCATAAAGAGAAAAATGAGAATGGAGAAGAAACCCTCGTGCCTTCCAATCCCTATCCCAATCTTGACGATGGCTTCTATGAAATCGAAACCATACGCCGTAAGAGGCTACGCAAGGGTCAGCTCCAGTACCTAATCAAATGGCGTGGATGGCCTGAGACTGCCAACACTTGGGAACCTCTTGAAAATCTACAGTCCGTTCCTGATCTCGTTGATGCTTTTGAGGACAGCCTCAAGTCTGGAAAACATCAGAAGCGCAAGCGCAAGCATGTGGATGTGCTTCAACTCACCCTACTCAAGAAGCGCTCCGAACGTTCTACCACTTCTTACAGCCTTAGACATTTCCCACCTCTAACTCCCACTAATGCAAATGATTATGATCCAAAGCTCAGTGAACTTAAGGCACCAACACACACTGGGGTTCAGCTAGATAACCTTGCAATACATTTCCAACAACCAATTCCAAGCAGAGGAGCAAAAAGGAGAAAATCTGCTTCTTCTGTCAAGAGGTTCAAGAGAGACACCGATGCAGCTGCACTTCAACCAATTTCTGCTCCTATCAACATGCCTGATGCTAATACTGCCTGCAATATTGTCAAGATTATCAAGCCAATAGGCTATTCAGCTTCTTTATCTGACAACATGCACGATGTTTTAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTGGACAACAGATATCTCAAGGCATACAATCCTCTTCTGCTGATCAATTTCTATGAGATGCATCTCCGGTATACTCCTACACCGTGA	903	0.4574	MKKRSSSSSSSSSVFEANGVEEPQQPSSCAAAAAAALDELHKEKNENGEETLVPSNPYPNLDDGFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLENLQSVPDLVDAFEDSLKSGKHQKRKRKHVDVLQLTLLKKRSERSTTSYSLRHFPPLTPTNANDYDPKLSELKAPTHTGVQLDNLAIHFQQPIPSRGAKRRKSASSVKRFKRDTDAAALQPISAPINMPDANTACNIVKIIKPIGYSASLSDNMHDVLVTFMAMRSDGTEVMVDNRYLKAYNPLLLINFYEMHLRYTPTP*	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g0016	300	ProSiteProfiles	Chromo and chromo shadow domain profile.	66	125	IPR000953	-
	Gso4g0016	300	MobiDBLite	consensus disorder prediction	1	25	-	-
	Gso4g0016	300	SMART	ChS_2	226	299	IPR008251	GO:0005634
	Gso4g0016	300	SMART	chromo_7	65	118	IPR000953	-
	Gso4g0016	300	MobiDBLite	consensus disorder prediction	1	33	-	-
	Gso4g0016	300	SUPERFAMILY	Chromo domain-like	54	121	IPR016197	-
	Gso4g0016	300	CDD	CD_CSD	66	115	-	-
	Gso4g0016	300	ProSitePatterns	Chromo domain signature.	83	103	IPR023779	-
	Gso4g0016	300	Pfam	Chromo (CHRromatin Organisation MOdifier) domain	66	115	IPR023780	-
	Gso4g0016	300	PRINTS	Chromodomain signature	63	71	IPR017984	-
	Gso4g0016	300	PRINTS	Chromodomain signature	76	90	IPR017984	-
	Gso4g0016	300	PRINTS	Chromodomain signature	91	103	IPR017984	-
	Gso4g0016	300	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	14	145	IPR044251	GO:0006325\|GO:0031507
	Gso4g0016	300	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	161	299	IPR044251	GO:0006325\|GO:0031507
	Gso4g0016	300	Gene3D	-	39	118	-	-
	Gso4g0016	300	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	161	299	-	-
	Gso4g0016	300	PANTHER	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	14	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g0016	Gso-Chr4	180493	186210	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g0016	-		-	gmx:100788091	567.385

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0016	4	180493	186210	Gso6g0017	6	182666	187550	GST