Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0009 ATGGAAGGATTGGCGCTACCAGTTGCGCAATCGCAATCACAACAGTTGCCGTTTCCAAGGCCAAAGCTGTCCGCCATTCCCGCAGGCACAGCTTATGGATTTGTCTCTCTCAAACGACACCGTGGAAGCGGGTTTCGTTTTCGCACTTGCTTATGTTCGCAGGCACAGGCACAGGCACAGGCACAGGCACAAGGCGTTCCTCTTCCCGAGCAAGTCACAGTCACAGACCCAGACAACTCTGTGAGTGGGGATTCCATACGGCAGAGATTTCTGAATTTCTATGCTTCCCGTGGTCACAAGGTTCTTCCCAGTGCTTCTCTTGTCCCAGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGATTCCAAGACAAGTACCTTGTGCTGCTACTGCTCAAAGGTGCATCCGTACTAATGATATCCACAATGTTGGCCTAACTGCCAGACATCAGACATTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTCATTACTTCAAAAAACAAGCTATTCTTTGGGCATGGGAGCTTTCCACCGCAGAGTTTGGTTTGCCACCAGACAGACTGTGGATTAGTGTTTATGAAGATGACGATGAGGCTTTTCAGCTCTGGTCCCACGAGGTCGGTGTCCCAGTTGAGCGAATCAAGAGGTTGGGAGAAGAGGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTCTATCCTGAGAGGGGATATGTAGATGCCGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTAGTATTCATGCAATACAACAAAAAAGATGACGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGCATGGCTCGTATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAATTAGCAAATGTTTCATATGGTATTGCCGATGATCAGACAAAGAGAAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAATGGTGATGGTAGGGGTGACCTTGAAGGAGCATTTTTACCAATGATTGCTGAGAAGGTAGTGGAATTAAGTACACACATTGATGCTGATGTGAAGAACAAAGCACCTCGTATCTTTGAGGAGTTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACTCTAGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTCTCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACTGTGCCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCTCACAATACTGTCAAACTTGCCATTGAAAATGGAGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACCGCCTTCATTGTAAAGCAATGATAGAAAGCCTAACGGTAAATGGAAATCCAGTTCCACAGGTCAGTGAAGGGAGTAACGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGAGAATCAACTAAAAGCTGTTGTGGAGATATTAGATGTTCAGAAATCTTTTGGCAACATATTTGTTCACAAGGGTACAGTCCAAAAGGGTGTAGTAGAGGTTGGCAAAGAAGTCAAAGCAGCAGTTGACGTGAAACTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCATCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAAAACTAATAAATGGATGGATTGAGGATGCAACGCTACTTCAAACCAAAGTGATGCCTCTTGTTGATGCAAAAAGTGCTGGGGCTATAGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCCGTAATACTTCTGAAATTCGTGGTTTTAAAATTATCTCAGAACAGGGTATTGCATCTGGAATCAGACGTATCGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTATTAGAGGAGTTACGGGTAGTGAGAAATGAAAATTCTGCTGTGCGTGCAAAAGCAGCAATCTACAAAGCCTCGGTCATTGCAAGCAAAGCATTGTTGGTGGGAAATTCAAAACAGTACAGGGTACTAGTTGAGTGCTTTGATGATGTTGATGCTGAGTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGATACTAGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTTGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGAAAGTTTATTGGACAAATAGCAAAATTATGTGGTGGTGGAGGAGGTGGAAGGCCAAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTTGATAAGGCTCGGTCAGAGCTTATAGCCACTCTATGTGAAAAAGGGAATTGA 2943 0.4353 MEGLALPVAQSQSQQLPFPRPKLSAIPAGTAYGFVSLKRHRGSGFRFRTCLCSQAQAQAQAQAQGVPLPEQVTVTDPDNSVSGDSIRQRFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKIPRQVPCAATAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGHYFKKQAILWAWELSTAEFGLPPDRLWISVYEDDDEAFQLWSHEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFYPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGINGDGRGDLEGAFLPMIAEKVVELSTHIDADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLSDALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLAIENGENIAENVPDTEFIGYDRLHCKAMIESLTVNGNPVPQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQLKAVVEILDVQKSFGNIFVHKGTVQKGVVEVGKEVKAAVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEKLINGWIEDATLLQTKVMPLVDAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVRNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVVRNENSAVRAKAAIYKASVIASKALLVGNSKQYRVLVECFDDVDAESLKSAAEYLLETLTDPAAVILGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALDKARSELIATLCEKGN* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0009 980 PANTHER ALANYL-TRNA SYNTHETASE 82 970 - -
Gso6g0009 980 Pfam DHHA1 domain 827 969 IPR003156 GO:0003676
Gso6g0009 980 Hamap Alanine--tRNA ligase [alaS]. 82 975 IPR023033 GO:0004813
Gso6g0009 980 Gene3D - 863 971 - -
Gso6g0009 980 Gene3D - 718 771 - -
Gso6g0009 980 SUPERFAMILY ThrRS/AlaRS common domain 646 805 IPR018163 GO:0000166
Gso6g0009 980 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 747 790 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso6g0009 980 Gene3D - 657 792 - -
Gso6g0009 980 Hamap Probable alanine--tRNA ligase, chloroplastic. 68 977 IPR027522 GO:0009507
Gso6g0009 980 Gene3D Bira Bifunctional Protein; Domain 2 81 314 IPR045864 -
Gso6g0009 980 Gene3D - 532 646 - -
Gso6g0009 980 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 318 527 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Gso6g0009 980 TIGRFAM alaS: alanine--tRNA ligase 86 954 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 Gene3D - 794 855 - -
Gso6g0009 980 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 81 803 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Gso6g0009 980 SUPERFAMILY Class II aaRS and biotin synthetases 83 317 IPR045864 -
Gso6g0009 980 Pfam tRNA synthetases class II (A) 86 648 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Gso6g0009 980 CDD AlaRS_core 84 313 - -
Gso6g0009 980 SMART tRNA_SAD_4 747 790 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso6g0009 980 PRINTS Alanyl-tRNA synthetase signature 149 160 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 PRINTS Alanyl-tRNA synthetase signature 271 282 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 PRINTS Alanyl-tRNA synthetase signature 298 311 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 PRINTS Alanyl-tRNA synthetase signature 349 365 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 PRINTS Alanyl-tRNA synthetase signature 373 386 IPR002318 GO:0000166|GO:0005737
Gso6g0009 980 Coils Coil 826 846 - -
Gso6g0009 980 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 82 970 - -
Gso6g0009 980 SUPERFAMILY Translation proteins 541 646 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0009 Gso-Chr6 136616 142652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0009 K01872 - gmx:100817906 1873.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0011 4 133867 139943 Gso6g0009 6 136616 142652 GST