Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0011 ATGGAAGGGTTGGCGTTGGCGGTTCCAGTTGCGCAATCACAACTGTTGCCGTTTCCCACAGCTTATACAGGGTTTGTCTCTCTCAAACGACACCGTGGACGCGGGTTTCGTTTTCGGACTTGGTTATGTTCTCAGGCTCAAGGCGTTCCTCTTCCCGAACAAGTCACTGTCCCAGACACAGAGAATTCCTTGACCGGGGATTCCATTCGGCAGAGATTTCTGAATTTCTATGCTTCCCGCGGTCACAAGGTTCTTCCCAGTGCTTCTCTTGTCCCAGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCTCAAAGGTGCATCCGTACTAATGATATCCACAATGTTGGCCTAACTGCCAGACATCAGACATTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTCATTACTTCAAAAAACAAGCTATTCTTTGGGCATGGGAGCTTTCCACCGCAGAGTTTGGTTTGCCTCCAGACAGATTGTGGATTAGTGTTTATGAAGATGACGATGAGGCTTTTCAGCTCTGGTCCGACGAGGTCGGTGTCCCAGTTGAGCGGATAAAGAGGTTGGGAGAAGAGGACAACTTCTGGACTAGTGGAGTGACAGGTCCTTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCCGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTAGTATTCATGCAATACAACAAAAAAGATGACAGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAATTAGCAAATGTTTCATATGGTATTGCCGATGATCAGACAAAGAGAAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGACGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGTGACCTTGAAGGAGCATTTTTACCAATTATTGCGGAGAAGGTAGTGGAATTAAGTACACACATTGATGCTGATGTGATGAACAAAGCATCTCGTATCTTTGAGGAGTTGAAGAGAGAGGAGCTTCGATTTGTGCAGACTCTAGAGAGAGGAGAAAAGTTGCTCGAGGAGAAACTTTCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACCGTGCCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGAGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAACTTGACATTGAAAATGGAGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGATAACCTTCATTGTAAAGCAATGATAGAAAGCCTAATGGTAAATGGAAATCCAGCTCCACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTATCTATATATTTCAAAGGGTGAGAATCAACCAAAAGCTGTTGTGGAGATATTAGATGTTCAGAAATCTTTTGGCAACATATTTGTTCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTTGAAGCAGCAGTTGATGTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAGGTTATTGGTCAGGAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAGTGCTAATAAATGGATGGATTGAGGATGCAACGCAACTTCAAACCAAAGTGATGCCTCTTGTTGAAGCAAAAAGTGCTGGGGCTATAGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCCGAAATTCGTGGTTTTAAAATTATCTCAGAACAGGGTATTGCATCTGGAATCAGACGTATCGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTTTTAGAGGAGTTAAGGGCAGTGAGAAATGAAAATTCTGCTGTTCATGCAAAAGCAGCAATCTACAAAGCTTCAGTCATTGCAAGCAAAGCAATGTTGGTGGGGAATTCAAAACAGTACAGGGTACTGGTTGAGTGCTTTGATGATGCTGATGCTGAGTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTTGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATCCAGGCAGGCAAGTTTATTGGACAAATAGCAAAATTATGTGGTGGTGGAGGAGGTGGAAGGCCAAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTTGATAAGGCTCGGTCAGAGCTTATAGCTACTCTATGTGAAAAAGGGAATTGA 2892 0.4319 MEGLALAVPVAQSQLLPFPTAYTGFVSLKRHRGRGFRFRTWLCSQAQGVPLPEQVTVPDTENSLTGDSIRQRFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGHYFKKQAILWAWELSTAEFGLPPDRLWISVYEDDDEAFQLWSDEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDSSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDADVMNKASRIFEELKREELRFVQTLERGEKLLEEKLSDALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLDIENGENIAENVPDTEFIGYDNLHCKAMIESLMVNGNPAPQVSEGSNVEVLLNKTPFYAESGGQIGDHGYLYISKGENQPKAVVEILDVQKSFGNIFVHKGTVQKGVVEVGKEVEAAVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEVLINGWIEDATQLQTKVMPLVEAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRAVRNENSAVHAKAAIYKASVIASKAMLVGNSKQYRVLVECFDDADAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALDKARSELIATLCEKGN* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0011 963 SUPERFAMILY ThrRS/AlaRS common domain 629 788 IPR018163 GO:0000166
Gso4g0011 963 Coils Coil 809 829 - -
Gso4g0011 963 Hamap Probable alanine--tRNA ligase, chloroplastic. 56 960 IPR027522 GO:0009507
Gso4g0011 963 Hamap Alanine--tRNA ligase [alaS]. 64 958 IPR023033 GO:0004813
Gso4g0011 963 TIGRFAM alaS: alanine--tRNA ligase 69 937 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 Pfam tRNA synthetases class II (A) 69 631 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Gso4g0011 963 Gene3D - 846 954 - -
Gso4g0011 963 Gene3D - 701 754 - -
Gso4g0011 963 CDD AlaRS_core 67 296 - -
Gso4g0011 963 Gene3D - 640 775 - -
Gso4g0011 963 PANTHER ALANYL-TRNA SYNTHETASE 65 953 - -
Gso4g0011 963 Gene3D Bira Bifunctional Protein; Domain 2 64 297 IPR045864 -
Gso4g0011 963 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 65 953 - -
Gso4g0011 963 SUPERFAMILY Class II aaRS and biotin synthetases 65 300 IPR045864 -
Gso4g0011 963 Gene3D - 514 629 - -
Gso4g0011 963 PRINTS Alanyl-tRNA synthetase signature 132 143 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 PRINTS Alanyl-tRNA synthetase signature 254 265 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 PRINTS Alanyl-tRNA synthetase signature 281 294 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 PRINTS Alanyl-tRNA synthetase signature 332 348 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 PRINTS Alanyl-tRNA synthetase signature 356 369 IPR002318 GO:0000166|GO:0005737
Gso4g0011 963 Gene3D - 777 838 - -
Gso4g0011 963 SMART tRNA_SAD_4 730 773 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso4g0011 963 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 730 773 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso4g0011 963 SUPERFAMILY Translation proteins 524 629 IPR009000 -
Gso4g0011 963 Pfam DHHA1 domain 810 952 IPR003156 GO:0003676
Gso4g0011 963 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 64 786 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Gso4g0011 963 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 301 510 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0011 Gso-Chr4 133867 139943 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0011 K01872 - gmx:100788288 1852.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0011 4 133867 139943 Gso4g0011 4 133867 139943 ECH
Gso4g0011 4 133867 139943 Gso6g0009 6 136616 142652 GST