Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0007 ATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGGTACTATGAGCTTTCAAGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA 513 0.4113 MEKRVAILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVSLNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSENGRFQLDNLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0007 170 PANTHER PEFLIN 7 166 - -
Gso6g0007 170 Gene3D - 1 168 - -
Gso6g0007 170 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Gso6g0007 170 SMART efh_1 43 71 IPR002048 GO:0005509
Gso6g0007 170 SMART efh_1 7 35 IPR002048 GO:0005509
Gso6g0007 170 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Gso6g0007 170 SUPERFAMILY EF-hand 5 166 IPR011992 -
Gso6g0007 170 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Gso6g0007 170 Pfam EF hand 44 66 IPR002048 GO:0005509
Gso6g0007 170 PANTHER PEFLIN 7 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0007 Gso-Chr6 117399 120660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0007 2 132 EF-hand Containing Proteins AT5G04870 25.362 3.15e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0007 - - gmx:100814189 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0008 4 108420 113246 Gso6g0007 6 117399 120660 GST