Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0008 ATGGAGAACAGGGTAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTACAGCTGAAGACTGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTTGTTCAGCAAATGATCAGGATGTACGATTTCGACAGGAATGGTACTATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGGAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGGTTTCGGCTGGATGACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTATTTAATTCATTTGATACAGCTAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTAAATATGATTCAACTATATGA 510 0.4 MENRVILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALGKIGFMLDSPAFYSVCESFDQSKNGRFRLDDLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCKYDSTI* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0008 169 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Gso4g0008 169 Pfam EF hand 43 65 IPR002048 GO:0005509
Gso4g0008 169 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Gso4g0008 169 SMART efh_1 42 70 IPR002048 GO:0005509
Gso4g0008 169 SMART efh_1 6 34 IPR002048 GO:0005509
Gso4g0008 169 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Gso4g0008 169 SUPERFAMILY EF-hand 6 163 IPR011992 -
Gso4g0008 169 Gene3D - 1 166 - -
Gso4g0008 169 PANTHER PEFLIN 6 163 - -
Gso4g0008 169 PANTHER PEFLIN 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0008 Gso-Chr4 108420 113246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0008 7 131 EF-hand Containing Proteins AT5G12180 27.273 2.86e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0008 - - gmx:100792880 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0008 4 108420 113246 Gso4g0008 4 108420 113246 ECH
Gso4g0008 4 108420 113246 Gso6g0007 6 117399 120660 GST