Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0738 ATGAACGTGGATCACGATCAGCCTCCCTCGGTGGCCAAGGCCCAAGCGCTGCAGACCCTAACGGCAGGTTCTCTCTCGTCGTCGGTGGCGAAGCTCGCCGCATCCTCGCGGTGCATCCCTTCCGACAAGGACTTCCACTTCTACCGCAACTTCGAGGAGTTCAAGGTCCCCGTCGACGAAATCGCGCGGGAGTCTCGGTCGATGCTCGAGGCCTTCGGCGCTGTGGCGGCCCACGCGGCGTTCCCTGGCGACGTCGACGACGACGCCGCTTACGACTGGCTAGTGAACGCGAATGACGACATTTTGGAGCGGTTCGACGTGTCGGCGGACGAGTTCCGGAAGGTGCTGCAGGAGGAGGAGGCTCGGCGTCCGGCGATGCATTCCATGGAGGAAGACGGGTTTCAGTTGGTTTCTGGGAGGAAGAAGAAAGGGGGGAGAGGAAATGTGACTCTGGCGGCTACGGATTCTGAGACGGTGGCGTCACCGGGAGTTACGGTGGCAACCAAGGATAAGAAGACGATGGGGCCGAAGTCGAAGGTTCCGTTTCATATACCGACGATTAGGAGGCCGCAGGATGAGTATAGTATAGTGGTTAATAATGCGAACATGCCGTTTGAGCATGTTTGGTTGCAGAGGAGTGATGATGGGTTGAGGTTCATTCATCCACTGGAAAAACTATCTGTTTTGGATTTTGTTGATACAAATCTTGAGGATGTTGTGCCAGTGAAGCCTCCCTCAATAGAAAGCACCCCTTTTAAGCTCGTGCAGGAAGTCAAAGATTTAAAAGAGTTGGTGGCTAAGCTGCGTTCTGTGAATGAATTTGCGGTTGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACTTGCCTGATGCAAATTTCAACAAGGACCGAAGATTTTGTTGTTGACACATTGAAACTTCGCATTCATATTGGACCCTATCTAAGGGAAATCTTCAAGGACCCTGCCAAAAGGAAGGTCATGCATGGTGCGGATCGAGATATTGTGTGGCTTCAACGAGACTTTGGAATTTATATTTGTAATTTGTTTGACACTCACCAGGCTTCAAAGTTGCTAAACTTGGAGAGAAATAGTTTGGAGCATATTCTACATCATTTTTGTGAAGTTACTGCAAACAAAGAATACCAAAATGCAGACTGGAGACTACGTCCACTTCCTAATGAGATGCTAAGATATGCCAGAGAAGATACACACTATCTGTTGTATATATATGACTTAATGAGGATTAGGTTATTTGCCTTGTCTAAGGAGTCTGAAAGTTCCGAGTCTTCAGACACTCCTCCAGTGGAGGTCTACAAACGCAGTTATGATGTTTGCATGCAGCTATATGAGAAAGAATTTCTGACAGAGAACTCCTATCTTCATATATATGGGTTGCAGGGGGCCGGTTTCAATGCTCAACAACTTGCTATTGTTTCTGGGTTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAGGCATTCTATTCAGAATTCGGCTGCATTTGAGGAAGCTGCTCAACAGTTGAAAGAGGCACAAGCTGGCACTGCATCGGATGTAGTACCCTTTACAGATGGAACTGAAGATCCCCAATCCCATACACAAGATTCTAAGGAATCTTCTAATCATCAAGATACAAATGTACCAATAAATCTTAAGTCCAATAGTCTTAGATCCGAGCCACCAAAGGATAGTCTCACAATTGCAGATCAGAATAGGGATGCTAATGTTGGTGCACTTTCTACTACAAAGGGAAATGGAGCAACTGTTCAGGTGCTAAAAAAGCCTACTGGTGCTTTTGGGGCACTCCTTGGGAATTCTGCTTCAAAGAGGAAGCTTGGTCCTGATAAGGGCAAGGAAGACAGCAAGCTAGAGCAGATTAGATCTTCTGTCAGTCTTCCTTTCCATTCATTTTTGGGTAGCAGTGAAAAGTCAGAACCTACAGTAGAAACTCATACTGTAGCATCTGAAATGTTAGAGTCACAGAGACCTGTTTCTGATGTAGTTTCTGTCTCTCCTCTAGATGAGATTATAATGCTAGAATCAGGCACGGGTGCAGAGAATATGGAGCAGAATAACCTAGAAAGCTCCAGTGAGCACAGGGAGAAAGATTCTGTTGTGTCCATTTCGGGAAAAGAGGATGAAGATGAGTCAGTATCACTGTTGGAATTGTCATCAAATTTTAAAAAATGCTTTCATTCAAATGATCAAAATTATAAAACCAGATGGCCCAAGAAAACTGAACAGCCCAGTGGCTTAGTGCCGATGAAGCCATTTGATTATGAAGCTGCAAGGAAACATGTTAAGTTTGGAGAACATACAAAGCATGCATCTTCCAAGGGTTCTGATAGTCATATGGAGGTAGAGGACTCAGGCAGCAAGAAGCAGCGGTCAACAATAGGACAGGGACAATTGCCACAAGGTAGAAGACGTCAGGCATTTCCTGCTTCTGGGAATCGTAGTTCAACATTCCGCTGA 2634 0.4579 MNVDHDQPPSVAKAQALQTLTAGSLSSSVAKLAASSRCIPSDKDFHFYRNFEEFKVPVDEIARESRSMLEAFGAVAAHAAFPGDVDDDAAYDWLVNANDDILERFDVSADEFRKVLQEEEARRPAMHSMEEDGFQLVSGRKKKGGRGNVTLAATDSETVASPGVTVATKDKKTMGPKSKVPFHIPTIRRPQDEYSIVVNNANMPFEHVWLQRSDDGLRFIHPLEKLSVLDFVDTNLEDVVPVKPPSIESTPFKLVQEVKDLKELVAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYAREDTHYLLYIYDLMRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGLQGAGFNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVEHNLDTVVSIIRHSIQNSAAFEEAAQQLKEAQAGTASDVVPFTDGTEDPQSHTQDSKESSNHQDTNVPINLKSNSLRSEPPKDSLTIADQNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSASKRKLGPDKGKEDSKLEQIRSSVSLPFHSFLGSSEKSEPTVETHTVASEMLESQRPVSDVVSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSVVSISGKEDEDESVSLLELSSNFKKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARKHVKFGEHTKHASSKGSDSHMEVEDSGSKKQRSTIGQGQLPQGRRRQAFPASGNRSSTFR* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0738 877 Gene3D HRDC domain 460 558 IPR044876 -
Gso5g0738 877 SUPERFAMILY Ribonuclease H-like 187 442 IPR012337 -
Gso5g0738 877 MobiDBLite consensus disorder prediction 565 624 - -
Gso5g0738 877 SUPERFAMILY HRDC-like 456 549 IPR010997 GO:0000166|GO:0044237
Gso5g0738 877 ProSiteProfiles HRDC domain profile. 474 554 IPR002121 GO:0003676
Gso5g0738 877 MobiDBLite consensus disorder prediction 736 770 - -
Gso5g0738 877 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 29 714 IPR045092 GO:0000175|GO:0000467
Gso5g0738 877 MobiDBLite consensus disorder prediction 819 877 - -
Gso5g0738 877 CDD Rrp6p_like_exo 248 443 - -
Gso5g0738 877 SMART 35exoneu6 252 421 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso5g0738 877 MobiDBLite consensus disorder prediction 593 624 - -
Gso5g0738 877 Gene3D - 186 459 IPR036397 GO:0003676
Gso5g0738 877 SMART hrdc7 474 554 IPR002121 GO:0003676
Gso5g0738 877 Pfam PMC2NT (NUC016) domain 34 113 IPR012588 GO:0000176|GO:0006396
Gso5g0738 877 PANTHER 3'-5' EXONUCLEASE 29 714 - -
Gso5g0738 877 MobiDBLite consensus disorder prediction 746 770 - -
Gso5g0738 877 Pfam 3'-5' exonuclease 255 417 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso5g0738 877 Pfam HRDC domain 477 544 IPR002121 GO:0003676
Gso5g0738 877 MobiDBLite consensus disorder prediction 819 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0738 Gso-Chr5 14637738 14660963 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0738 K12591 - gmx:100819332 1677.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0738 5 14637738 14660963 Gso19g0974 19 36988500 37005226 GST